Mining gene (copA-like) This procedure was developed to mine the natural diversity of novel CopA proteins from eDNA. It also can be applied for mining other proteins.

Introduction

 Mining gene (copA-like)

We developed a sequence-based functional metagenomics procedure for mining the diversity of copper resistance gene copA in global microbiomes, by combining the metagenomic assembly technology.

Publications

  1. Sequence-based Functional Metagenomics Reveals Novel Natural Diversity of Functioning CopA in Environmental Microbiomes
    Wenjun Li, Likun Wang, Xiaofang Li, Xin Zheng1, Michael F. Cohen, Yong-Xin Liu, NA - NA
    Cited by NA (Google Schoolar as of May 17, 2022)

Credits

  1. Xiaofang Li xfli@sjziam.ac.cn
    Investigator

    Carr, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, China

  2. Wenjun Li liwenjun181@mails.ucas.ac.cn
    Investigator

    Carr, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, China

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Summary
AccessionBT007306
Tool TypePipeline & Protocol
CategoryGene prediction
PlatformsLinux/Unix, Windows
TechnologiesBASH
User InterfaceTerminal Command Line
Input DataFASTA
Latest Release1.0 (May 16, 2022)
Download Count832
Country/RegionChina
Submitted ByXiaofang Li
Fundings

National Natural Science Foundation of China (No. 41877414), the National Key R&D Program of China (No.2018YFD0800306)