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  1. iDog
  2. DogSD
  3. Download
Data list

1. bam file

2. bai file

3. fastq file

4. vcf file

Download data
4.vcf file
Note: The following list provides the download links for several individual samples. Although it can be downloaded directly, we do not recommend you to do this because of large data size. You can download the data by following instructions:
Under linux environment: use wget command
    such as wget -r ftp://download.big.ac.cn/idog/dogsd/vcf/Filtred_Published.vcf.bz2
Under windows environment: use FTP tool(FileZilla)
    host: download.big.ac.cn    username: anonymous    password: anonymous
    If you connect successfully, then change to the path dogsd.
File name MD5
Filtred_Published.vcf.bz2 82b87aaccfca0d0f8f315dfa300cad33
SRZ189891_722g.990.SNP.INDEL.chrAll.vcf.gz 79320e152a583cc0a36d3ecb94da20f2
We have 127 gvcf files of each sample, and split them by chromosome. Then we used GenotypeGVCFs command of GATK pipeline to get vcf files for each chromosome. Finally, we used CatVariants command to merge all chromosome files and get the whole vcf file which includes 127 samples.