Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/CHN/SH-HG20230504-471/2023 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds.
Seq-submit ::= {
sub {
contact {
contact {
name name {
last "Zhang",
first "Wanju",
middle "",
initials "",
suffix "",
title ""
},
affil std {
affil "Shanghai Municipal Center for Disease Control & Prevention",
div "Microbe lab",
city "Shanghai",
country "China",
street "west zhongshan road 1380",
email "zhangwanju@scdc.sh.cn",
postal-code "200336"
}
}
},
cit {
authors {
names std {
{
name name {
last "Zhang",
first "Wanju",
initials "W."
}
}
},
affil std {
affil "Shanghai Municipal Center for Disease Control & Prevention",
div "Microbe lab",
city "Shanghai",
country "China",
street "west zhongshan road 1380",
postal-code "200336"
}
},
date std {
year 2023,
month 5,
day 11
}
},
subtype new,
tool "table2asn 1.26.678"
},
data entrys {
set {
class nuc-prot,
descr {
source {
org {
taxname "Severe acute respiratory syndrome coronavirus 2",
orgname {
mod {
{
subtype isolate,
subname "SARS-CoV-2/human/CHN/SH-HG20230504-471/2023"
},
{
subtype nat-host,
subname "Homo sapiens; Host_age: 30; Host_sex: Female"
}
},
gcode 1
}
},
subtype {
{
subtype country,
name "China:Shanghai"
},
{
subtype isolation-source,
name "Pharyngeal swab"
},
{
subtype collection-date,
name "2023-04-30"
},
{
subtype other,
name "Passage_details/history: Original;
Additional_host_information: Patient infected while traveling in Russia"
}
}
},
user {
type str "StructuredComment",
data {
{
label str "StructuredCommentPrefix",
data str "##Genome-Assembly-Data-START##"
},
{
label str "Assembly Method",
data str "Consensus sequence method v. 940-000133-00"
},
{
label str "Sequencing Technology",
data str "MGISEQ-200"
},
{
label str "StructuredCommentSuffix",
data str "##Genome-Assembly-Data-END##"
}
}
},
create-date std {
year 2023,
month 5,
day 11
}
},
seq-set {
seq {
id {
genbank { accession "C_AA014159", version 1}, gi 0670650650141591
},
descr {
user {
class "1.0",
type str "AutodefOptions",
data {
{label str "UseLabels",data bool TRUE },
{label str "LeaveParenthetical",data bool TRUE},
{label str "SpecifyNuclearProduct",data bool TRUE},
{label str "MaxMods",data int 0},
{label str "FeatureListType",data str "List All Features"},
{label str "MiscFeatRule",data str "Delete"},
{label str "HIVRule",data str "WantBoth"},
{label str "ModifierList",
data fields { {label str "OrgMods",num 1,
data strs {"isolate" }}}}}},
molinfo {
biomol genomic
},
user {
type str "Submission",
data {
{
label str "AdditionalComment",
data str "GenBase"
}
}
}
},
inst {
repr raw,
mol rna,
length 29772,
topology linear,
strand ss,
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EFCF15E102FF48D74BFC4F41D287EF7C5FDFF50EF1FAF539CC4EDDEA143AC708AFE305795C53F0
E3AEFCFF9F51E20B704C308A7A3FFAC71FC8F60854B571F3EF0C19C70EFBCF02DEE0FD0FFB0E35
3FFA3BF140004100BE8E80B8BD22FCF72E60C3E47FE0CEDDD25FF7CE85F828022AC3F400DF2A0F
EEFC20CF8EBCFF00CCF70911973C3F226E37574ABFF69FC814FAC8FE50CACF04D1CAFD01FC7E7F
1320BCFE1D7BE3DF7D2BE849EB9E49F3CEEAF37D05CA1FF73C0330E00E814F1239EC87B91F8577
748040BB1BE035F47B20028373407DC1FC8B505048373EF23F5C33C407EE57FD382FFC194513F9
37BF39FA04A08834907BBE78F3DED3330FD914FFD9FF0BBCE8BB75C703C0E3779FC70EDCE48F4F
EC3C8AC382D25036752A407A033E78F30F303C5238FF129E6F327E83DC109F8F70972EB0F30F17
B323EFCA0B709D017FE22233F41E03734A5AC1017EC3AEF92B5C3EF1DD7F10D33AFD6151F3AEFA
D1414C48B2CB1FDFF81F713914907BFBA17002DC70FEBC0040EED0FD07D0EBF04A44AEF7C78B70
400BF797F5043FA4884F9E11C78E7B5B8D44847E23DF84F114EF7FEBAED2EF3045281031F7052B
E7BDFCD2AEF079120B57BE73D392341F1D71FA6EFCF712BDC3BFF4046E4A7BF0CAA7833B41074C
E2EE13153EB92B3399CBCD21D21C2DD369A91B2EC9CB43534F9711CED1FAE4803D2F9F1DC30773
E5315103FC73CBBC51203DC52EDCE142134B23EC43B13FBAE3D078392437FEF90CE92FFEC443C0
1B9FC1E8327BE042100115082FFE442D0103F10045143C0CFFAEBFC3FF440CF148D4D0050908AD
3F3E08DC7FD040B847E48E7A7D340433AE3E5FAE33E79C885D3FB9100BF0697C7BFE517F9D1238
0E3E74311F791EF26AC4347DEBE85FEB92B9E4F10314FE73903A7CCAFC3ACFA2F1120EF7738814
00F8F94143F0CB9CFA403D08747F7D4490B91FA007D08EEB414C39109FC0467EF0107C9D40FEB9
0FD0BBFC0E335FD1B7E102F8A782E40F8CAF8D12921F40BF92133B87410F0F2279203489F79C37
E79C700ED22EEC7E8434008BE3FFBA02A734DF3B5F574B49174EBB2DF7E4EE1F3B5791080207D1
079D794FED38E802447F5DB82BB7FBF40E9111EBFB0440A0FFCE051034F1C484113FBB7AC1EE3B
EC3283ED04112FCE35FE41783C8F4F428A2F23033FC20D3134523BE3F2B84DDE93C39F4BEC04F4
0080F8597438AF9420FC0E0DDD36375081FA02CE24B3300E94EB13FA72BFCC9E9F8F94CB0EB843
CE7F9ECE14BE7B2FB742A7BEF7EE8D79E40FE382187789CB9D028B40F13C44C0607CE8FEFCE20D
FC43E81EC1FE090AE03428E71D7D23FEF6671E418C58C425D1D5FDA3A7CFBE9BE47DF9EFFD2267
D4034C1DD00223A41C91DD42AEF47FBF907E7BEFBFB04BF1D117FE76F9E7A5F8255FF7737F39FC
B71F7E48F301FEC20C30E29FE9FE7A0396F500153C7F38E5073FDFE7A4C70FBC61CFB317C432EC
1F7D0FB4F1F4AE3A4410B5CFDE04E1C523EBAF31E003A837A2C021EEFB3C44BC7D1F4873C527B1
D0743E2C484FAEF813BC5F7D3710C03EF8E25E0813B503D110D86BD35A2FBC352C3A050FCE3816
1861C726E5FEC244278E2C607CEC74F6FDA088CAE6F0CBC326C7DFFDF9FDBACF7E72F11C94D7C7
99F63EEE6C79E433EF06E2DFB005F7FF1BF1DDBBC00DE0F7DC8BD78DF7ADC0607033CCF2FFDEFE
81FC3FC94E923D41AC73C5BE089F00275F820E8172C32BF5CF5F13A3FB7DC43F9739412832BFFB
330F0BC3FD77A7BCE94B07F07EFFB9F9E7BF120C0FA345AE83E73643A7EDFB29F8EE9D271F4F9F
7F487BF99B19BD4EEB4FC35201C13DF741B94753A473DE14859F7202E076C3689EE35F6E84DF6C
F9E845372867B84D0A1797020347BE71346067F7CF103EA27D926EC92B874AFF9E4C4B67128FA4
1CC0F011214F52C92E10CF9FE7EC4B0B84123BF4DDBE1FD2BC732488CF1C3CF39A1FF02FD4FE83
7E3C4D30174C3C00FCDC2D1C1E20C0CF743C8E089050E88F7701813803CF7FDFA478C11D9C7EE2
7F3471422EEF22B104B1FF00817E77DE81318A90F453F4D77278C103F91E1F9FC91D0FE7FE7ED7
869B0046DCD2F1B948D2FD1701EF4D2108A0BD081FC7750FFDF3EF9A432EFCC11FE7D11D008084
838F81FD3C3E1F73FB9FFC97F7BCF5FBFC3CE7CF37FEBDD1F81E4234C3807ED1970181380FDFBF
DF3834D107B2793F45083B2FC4B4EC7413414CECBE3856ED73D1F73DC0EB33C8B289C8034917F0
F83EE6E8E29EBDC0D153D2C4D8CDAC3CC4BF5EFC5FF10F0F94A05C0FAB2DFB2E6FBDBDCE087FF2
2CD386F6EFBFC8FD37018101F03B78C3A154014980E47593C6FEBA15D23D07A4B0520EBAA66340
106DA550AFC5430C79B7EBD167747413A428217C0F57628429BD43C114324B5238503E9C716089
C52183DBAEB86B00E02374B508EB3F71C5CA07A94827A1FD73AE704086934CEAF9078A897E0C45
008D13E91590D79C10E790DB9C41F5D0A0413E500A7DC6482A248A692D0977DDBD74D1B2D904BD
080F41D4A492C0607DD79C83A7A43A6B8E79DF9FE79E7E123E0527E22403B7AC0A50410429407B
47080DE79E29F70825DA4006C7947024C43B04427F6921BAD4810150A03FEA85281C3484281E3C
404FA5903E443F955267D26F7DA0ED993E93A0B445F6A06EBE17112B94D03E8E1023503F408D0B
4FF9E0C24CF864C4013D5141225C00A10020829E3807425F16488482012407B877DF5E7923FA38
FDD4043E410D4E25B9E1D074A5C074E485110A48EA73301BFD9FF5BF18CCCB71DFB920E0F76C1C
4C910B23B2F07F0DD132437F0D2EEC13CA8A1F80894513FD1712E0439CA889E5CCE822570EEC03
C3FCB2E73553B8FF0C'H
},
annot {
{
data ftable {
{
id local id 2,
data gene {
locus "ORF1ab"
},
location int {
from 241,
to 21521,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 1
},
{
id local id 3
}
}
},
{
id local id 5,
data gene {
locus "S"
},
location int {
from 21529,
to 25338,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 4
}
}
},
{
id local id 7,
data gene {
locus "ORF3a"
},
location int {
from 25347,
to 26174,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 6
}
}
},
{
id local id 9,
data gene {
locus "E"
},
location int {
from 26199,
to 26426,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 8
}
}
},
{
id local id 11,
data gene {
locus "M"
},
location int {
from 26477,
to 27145,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 10
}
}
},
{
id local id 13,
data gene {
locus "ORF6"
},
location int {
from 27156,
to 27341,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 12
}
}
},
{
id local id 15,
data gene {
locus "ORF7a"
},
location int {
from 27348,
to 27713,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 14
}
}
},
{
id local id 17,
data gene {
locus "ORF7b"
},
location int {
from 27710,
to 27841,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 16
}
}
},
{
data gene {
locus "ORF8"
},
location int {
from 27848,
to 28213,
strand plus,
id gi 0670650650141591
}
},
{
id local id 19,
data gene {
locus "N"
},
location int {
from 28228,
to 29478,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 18
}
}
},
{
id local id 21,
data gene {
locus "ORF10"
},
location int {
from 29503,
to 29619,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 20
}
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus frameshifting stimulation element
stem-loop 1",
location int {
from 13442,
to 13469,
strand plus,
id gi 0670650650141591
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus frameshifting stimulation element
stem-loop 2",
location int {
from 13454,
to 13508,
strand plus,
id gi 0670650650141591
}
},
{
data imp {
key "misc_feature"
},
comment "similar to ORF8 protein",
location int {
from 27848,
to 28213,
strand plus,
id gi 0670650650141591
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus 3' UTR pseudoknot stem-loop 1",
location int {
from 29554,
to 29589,
strand plus,
id gi 0670650650141591
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus 3' UTR pseudoknot stem-loop 2",
location int {
from 29574,
to 29602,
strand plus,
id gi 0670650650141591
}
},
{
data imp {
key "stem_loop"
},
comment "Coronavirus 3' stem-loop II-like motif (s2m)",
location int {
from 29673,
to 29687,
strand plus,
id gi 0670650650141591
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28806", version 1}, gi 067065065066288061
},
descr {
title "ORF1ab polyprotein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 7093,
seq-data iupacaa "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLRD
GTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKN
GNKGAGGHRYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDL
LARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIK
TIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL
PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGV
VGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKA
KKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNN
LVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIK
ESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTE
VLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD
TVIEVQGYKSVNIIFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYY
LFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDS
QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAAN
VYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ
HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVL
TAVVIPTKKASGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWN
LREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGY
VTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKR
GDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIK
PHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI
ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKG
VEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHSTFTCASEYTGNYQCGHYKHITSK
ETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY
PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNAT
NKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDII
LKPANNSLKITEEVGHTDLMAAYVDNSSLTIKRPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT
NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIW
FLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT
ISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFA
SFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFIS
DEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFD
GKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAK
NVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN
AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTL
VFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAA
VITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCY
DTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYR
SLPGVFCGVDAVNLFTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFI
VLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFN
GVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPFTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGS
DVLYQPPQISITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRK
SNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRHNFTIKGS
FLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR
WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFD
VVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFL
CLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL
VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFG
LFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLL
SVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSL
PSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAM
QTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSK
IVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTIKGGRFVLALL
SDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPAN
STVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKG
FCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNRVCGVSAARLTPCGTGTS
TDVVYRAFDIYNDKVAGFAKFLKTNCCRFKEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR
IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR
QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDL
TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPLTSFGPLVRKIFVDGVP
FVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNK
DFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIV
NNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQ
KLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR
FYRLANECAQVLSEMVMCGSSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYE
CLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTK
GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL
QYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQAVGACVLCNSQTSLRCGACIRRPFLCCKCCY
DHVIPTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAI
ATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRV
TKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSN
VANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECF
DKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLCAKHYVYIGDPAQLPAPRTLLTKGTLEPEY
FNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREF
LTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMS
DRDLYDKLQFTSLEIPRRNVATLQAENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDVPGIPKDMTYRRL
ISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREAVGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTD
FSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVKIGPERTCCLC
DRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVK
RVDWTIEYPIIGDELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEEL
FYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCRFDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPF
FYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNMMISAGFSLWVYKQFDTYNLWNT
FTRLQSLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILN
NLGVDIAANTVIWDYKRDAPAHISTIGVCSMTDIAKKPIETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGL
QPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEG
YAFEHIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIK
SQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQSSQAWQPGVAMPNLYKMQRMLLEKCDLQNYGDSATLPKG
IMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCAT
VHTANKWDLIISDMYDPKTKNVTKENDSKEGFFTYICGFIQQKLALGGSVAIKITEHSWNADLYKLMGHFAWWTAFVT
NVNASSSEAFLIGCNYLGKPREQIDGYVMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLKEGQINDMILS
LLSKGRLIIRENNRVVISSDVLVNN"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF1ab polyprotein"
}
},
location int {
from 0,
to 7092,
id gi 067065065066288061
}
},
{
data prot {
name {
"leader protein"
},
processed mature
},
location int {
from 0,
to 179,
id gi 067065065066288061
}
},
{
data prot {
name {
"nsp2"
},
processed mature
},
location int {
from 180,
to 817,
id gi 067065065066288061
}
},
{
data prot {
name {
"nsp3"
},
processed mature
},
location int {
from 818,
to 2762,
id gi 067065065066288061
}
},
{
data prot {
name {
"nsp4"
},
processed mature
},
location int {
from 2763,
to 3262,
id gi 067065065066288061
}
},
{
data prot {
name {
"3C-like proteinase"
},
processed mature
},
location int {
from 3263,
to 3568,
id gi 067065065066288061
}
},
{
data prot {
name {
"nsp6"
},
processed mature
},
location int {
from 3569,
to 3855,
id gi 067065065066288061
}
},
{
data prot {
name {
"nsp7"
},
processed mature
},
location int {
from 3856,
to 3938,
id gi 067065065066288061
}
},
{
data prot {
name {
"nsp8"
},
processed mature
},
location int {
from 3939,
to 4136,
id gi 067065065066288061
}
},
{
data prot {
name {
"nsp9"
},
processed mature
},
location int {
from 4137,
to 4249,
id gi 067065065066288061
}
},
{
data prot {
name {
"nsp10"
},
processed mature
},
location int {
from 4250,
to 4388,
id gi 067065065066288061
}
},
{
data prot {
name {
"RNA-dependent RNA polymerase"
},
processed mature
},
location int {
from 4389,
to 5320,
id gi 067065065066288061
}
},
{
data prot {
name {
"helicase"
},
processed mature
},
location int {
from 5321,
to 5921,
id gi 067065065066288061
}
},
{
data prot {
name {
"3'-to-5' exonuclease"
},
processed mature
},
location int {
from 5922,
to 6448,
id gi 067065065066288061
}
},
{
data prot {
name {
"endoRNAse"
},
processed mature
},
location int {
from 6449,
to 6794,
id gi 067065065066288061
}
},
{
data prot {
name {
"2'-O-ribose methyltransferase"
},
processed mature
},
location int {
from 6795,
to 7092,
id gi 067065065066288061
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28809", version 1}, gi 067065065066288091
},
descr {
title "ORF1a polyprotein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 4402,
seq-data iupacaa "MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLRD
GTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKN
GNKGAGGHRYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDL
LARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIK
TIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL
PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGV
VGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKA
KKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNN
LVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIK
ESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTE
VLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD
TVIEVQGYKSVNIIFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYY
LFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDS
QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAAN
VYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ
HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES
KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVL
TAVVIPTKKASGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWN
LREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGY
VTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKR
GDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIK
PHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI
ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKG
VEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHSTFTCASEYTGNYQCGHYKHITSK
ETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY
PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNAT
NKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDII
LKPANNSLKITEEVGHTDLMAAYVDNSSLTIKRPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT
NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIW
FLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT
ISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFA
SFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFIS
DEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFD
GKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAK
NVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN
AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTL
VFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAA
VITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCY
DTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYR
SLPGVFCGVDAVNLFTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFI
VLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFN
GVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPFTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGS
DVLYQPPQISITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRK
SNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRHNFTIKGS
FLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR
WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFD
VVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFL
CLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL
VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFG
LFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLL
SVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSL
PSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAM
QTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSK
IVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTIKGGRFVLALL
SDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPAN
STVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKG
FCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF1a polyprotein"
}
},
location int {
from 0,
to 4401,
id gi 067065065066288091
}
},
{
data prot {
name {
"leader protein"
},
processed mature
},
location int {
from 0,
to 179,
id gi 067065065066288091
}
},
{
data prot {
name {
"nsp2"
},
processed mature
},
location int {
from 180,
to 817,
id gi 067065065066288091
}
},
{
data prot {
name {
"nsp3"
},
processed mature
},
location int {
from 818,
to 2762,
id gi 067065065066288091
}
},
{
data prot {
name {
"nsp4"
},
processed mature
},
location int {
from 2763,
to 3262,
id gi 067065065066288091
}
},
{
data prot {
name {
"3C-like proteinase"
},
processed mature
},
location int {
from 3263,
to 3568,
id gi 067065065066288091
}
},
{
data prot {
name {
"nsp6"
},
processed mature
},
location int {
from 3569,
to 3855,
id gi 067065065066288091
}
},
{
data prot {
name {
"nsp7"
},
processed mature
},
location int {
from 3856,
to 3938,
id gi 067065065066288091
}
},
{
data prot {
name {
"nsp8"
},
processed mature
},
location int {
from 3939,
to 4136,
id gi 067065065066288091
}
},
{
data prot {
name {
"nsp9"
},
processed mature
},
location int {
from 4137,
to 4249,
id gi 067065065066288091
}
},
{
data prot {
name {
"nsp10"
},
processed mature
},
location int {
from 4250,
to 4388,
id gi 067065065066288091
}
},
{
data prot {
name {
"nsp11"
},
processed mature
},
location int {
from 4389,
to 4401,
id gi 067065065066288091
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28810", version 1}, gi 067065065066288101
},
descr {
title "surface glycoprotein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 1269,
seq-data iupacaa "MFVFLVLLPLVSSQCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHST
QDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPALPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIK
VCEFQFCNDPFLDVYQKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKEGNFKNLREFVFKNIDGYFKIYSKHT
PINLERDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPVDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTIT
DAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFHEVFNATTFASVYAWNRKRISNCVAD
YSVIYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLD
SKPSGNYNYLYRLFRKSKLKPFERDISTEIYQAGNKPCNGVAGPNCYSPLQSYGFRPTYGVGHQPYRVVVLSFELLHA
PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVI
TPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQT
QTKSHRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLL
QYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAG
FIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIG
VTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDKVE
AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVT
YVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPE
LDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIA
GLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSELVLKGVKLHYT"
},
annot {
{
data ftable {
{
data prot {
name {
"surface glycoprotein"
}
},
location int {
from 0,
to 1268,
id gi 067065065066288101
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28811", version 1}, gi 067065065066288111
},
descr {
title "ORF3a protein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 275,
seq-data iupacaa "MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIV
GVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQIINFVRIIMR
LWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLH
SYFTSDYYQLYSTQLSTDIGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF3a protein"
}
},
location int {
from 0,
to 274,
id gi 067065065066288111
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28812", version 1}, gi 067065065066288121
},
descr {
title "envelope protein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 75,
seq-data iupacaa "MYSFVSEEIGALIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVN
VSLVKPSFYVYSRVKNLNSSRVPDLLV"
},
annot {
{
data ftable {
{
data prot {
name {
"envelope protein"
}
},
location int {
from 0,
to 74,
id gi 067065065066288121
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28813", version 1}, gi 067065065066288131
},
descr {
title "membrane glycoprotein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 222,
seq-data iupacaa "MADSNGTITVEELKKLLEEWNLVIGFLFLTWICLLQFAYANRNRFLYI
IKLIFLWLLWPVTLTCFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG
TILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAYSRYRIGNY
KLNTDHSSSSDNIALLVQ"
},
annot {
{
data ftable {
{
data prot {
name {
"membrane glycoprotein"
}
},
location int {
from 0,
to 221,
id gi 067065065066288131
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28814", version 1}, gi 067065065066288141
},
descr {
title "ORF6 protein [Severe acute respiratory syndrome coronavirus
2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 61,
seq-data iupacaa "MFHLVDFQVTIAEILLIIMRTFKVSIWNLDYIINLIIKNLSKSLTENK
YSQLDEEQPMEIL"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF6 protein"
}
},
location int {
from 0,
to 60,
id gi 067065065066288141
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28815", version 1}, gi 067065065066288151
},
descr {
title "ORF7a protein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 121,
seq-data iupacaa "MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHP
LADNKFALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKTE"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF7a protein"
}
},
location int {
from 0,
to 120,
id gi 067065065066288151
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28816", version 1}, gi 067065065066288161
},
descr {
title "ORF7b [Severe acute respiratory syndrome coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 43,
seq-data iupacaa "MIELSLIDFYLCFLAFLLFLVLIMLIIFWFSLELQDHNETCHA"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF7b"
}
},
location int {
from 0,
to 42,
id gi 067065065066288161
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28807", version 1}, gi 067065065066288071
},
descr {
title "nucleocapsid phosphoprotein [Severe acute respiratory
syndrome coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 416,
seq-data iupacaa "MSDNGPQNQRNALRITFGGPSDSTGSNQNGGARSKQRRPQGLPNNTAS
WFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLSYGANKDG
IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSKRTSP
ARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN
FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTF
PPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSRADSTQA"
},
annot {
{
data ftable {
{
data prot {
name {
"nucleocapsid phosphoprotein"
}
},
location int {
from 0,
to 415,
id gi 067065065066288071
}
}
}
}
}
},
seq {
id {
genbank { accession "C_AAB28808", version 1}, gi 067065065066288081
},
descr {
title "ORF10 protein [Severe acute respiratory syndrome
coronavirus 2]",
molinfo {
biomol peptide,
tech concept-trans
}
},
inst {
repr raw,
mol aa,
length 38,
seq-data iupacaa "MGYINVFAFPFTIYSLLLCRMNSRNYIAQVDVVNFNLT"
},
annot {
{
data ftable {
{
data prot {
name {
"ORF10 protein"
}
},
location int {
from 0,
to 37,
id gi 067065065066288081
}
}
}
}
}
}
},
annot {
{
data ftable {
{
id local id 1,
data cdregion {
frame one,
code {
id 1
}
},
except TRUE,
product whole gi 067065065066288061,
location mix {
int {
from 241,
to 13434,
strand plus,
id gi 0670650650141591
},
int {
from 13434,
to 21521,
strand plus,
id gi 0670650650141591
}
},
xref {
{
id local id 2
}
},
except-text "ribosomal slippage"
},
{
id local id 3,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288091,
location int {
from 241,
to 13449,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 2
}
}
},
{
id local id 4,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288101,
location int {
from 21529,
to 25338,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 5
}
}
},
{
id local id 6,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288111,
location int {
from 25347,
to 26174,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 7
}
}
},
{
id local id 8,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288121,
location int {
from 26199,
to 26426,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 9
}
}
},
{
id local id 10,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288131,
location int {
from 26477,
to 27145,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 11
}
}
},
{
id local id 12,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288141,
location int {
from 27156,
to 27341,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 13
}
}
},
{
id local id 14,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288151,
location int {
from 27348,
to 27713,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 15
}
}
},
{
id local id 16,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288161,
location int {
from 27710,
to 27841,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 17
}
}
},
{
id local id 18,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288071,
location int {
from 28228,
to 29478,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 19
}
}
},
{
id local id 20,
data cdregion {
frame one,
code {
id 1
}
},
product whole gi 067065065066288081,
location int {
from 29503,
to 29619,
strand plus,
id gi 0670650650141591
},
xref {
{
id local id 21
}
}
}
}
}
}
}
}
}