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Hirame rhabdovirus, complete genome.

GenBank:
NC_005093.1

LOCUS       NC_005093              11034 bp    RNA     linear   VRL 13-AUG-2018
DEFINITION  Hirame rhabdovirus, complete genome.
ACCESSION   NC_005093
VERSION     NC_005093.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Novirhabdovirus hirame
  ORGANISM  Novirhabdovirus hirame
            Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina;
            Monjiviricetes; Mononegavirales; Rhabdoviridae; Gammarhabdovirinae;
            Novirhabdovirus.
REFERENCE   1  (bases 1 to 11034)
  AUTHORS   Kim,D.H., Oh,H.K., Eou,J.I., Seo,H.J., Kim,S.K., Oh,M.J., Nam,S.W.
            and Choi,T.J.
  TITLE     Complete nucleotide sequence of the hirame rhabdovirus, a pathogen
            of marine fish
  JOURNAL   Virus Res. 107 (1), 1-9 (2005)
   PUBMED   15567027
REFERENCE   2  (bases 1 to 11034)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2003) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 11034)
  AUTHORS   Oh,H.K., Eou,J.-I., Kim,D.-H. and Choi,T.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2002) Microbiology, Pukyong National University,
            599-1 Daeyeon 3-Dong, Nam-gu, Busan 608-737, Korea
  REMARK    Nucleotide and amino acid sequences updated by submitter
REFERENCE   4  (bases 1 to 11034)
  AUTHORS   Oh,H.K. and Choi,T.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-NOV-1998) Microbiology, Pukyong National University,
            599-1 Daeyeon-3 dong, Nam-Gu, Pusan 608-737, Korea
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AF104985.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..11034
                     /organism="Novirhabdovirus hirame"
                     /mol_type="genomic RNA"
                     /strain="CA 9703"
                     /isolation_source="rainbow trout gonad (RTG-2) cell line"
                     /db_xref="taxon:1980915"
     misc_feature    1..51
                     /note="3' untranslated region of viral genomic RNA; codes
                     for putative (+) leader RNA transcript; putative"
     regulatory      52..60
                     /regulatory_class="other"
                     /note="signal sequence for transcriptional termination or
                     polyadenylation"
     gene            167..1345
                     /gene="N"
                     /locus_tag="HIRRVgp1"
                     /db_xref="GeneID:2559538"
     CDS             167..1345
                     /gene="N"
                     /locus_tag="HIRRVgp1"
                     /codon_start=1
                     /product="nucleocapsid protein"
                     /protein_id="NP_919030.1"
                     /db_xref="GeneID:2559538"
                     /translation="MANLKEEFAGLRGVKGGALEDSGTEYDPTKINLTLYGTDKLYTLA
                     IIKRAVSQVGGSQTNKALGILCAFVTSENNPDMTDAAVKLLVDMRFKVDVVPVDDRLGD
                     NLDDPNSKLAEVLTEENMVDLVKGLLFTCALMVKYDVDKMATYCQQKLERLANSQGLNE
                     LTLISTSRAVLARIGAAVRPGQKLTKAIYGIILINLMDPATAARAKALCAMRLSGTGMT
                     MVGLFNQASKNLGAPPADLLEDLCMKSIIDSARRIVKLMRIVADVEDMTAKYAIMMSRM
                     LGDGYFKSYGINENSRITCILMNINEQYDEGTTGGLAGVRVSPPFRKLATEIARLLVKK
                     YDGNGSAGPGASDLVRQAEQAAQETEGEDDKYDEEGEEDGGEGEGGEDEEYY"
     misc_feature    257..1081
                     /gene="N"
                     /locus_tag="HIRRVgp1"
                     /note="Rhabdovirus nucleoprotein; Region: Rhabdo_ncap_2;
                     pfam03216"
                     /db_xref="CDD:397361"
     regulatory      1392..1404
                     /regulatory_class="other"
                     /note="signal sequence for transcriptional termination or
                     polyadenylation"
     gene            1445..2128
                     /gene="M1"
                     /locus_tag="HIRRVgp2"
                     /db_xref="GeneID:2559535"
     CDS             1445..2128
                     /gene="M1"
                     /locus_tag="HIRRVgp2"
                     /codon_start=1
                     /product="matrix protein 1"
                     /protein_id="NP_919031.1"
                     /db_xref="GeneID:2559535"
                     /translation="MSDNEGEQFFDIPKNALDRVEARTMCPREDGKVVRKQAPLKEEPR
                     LEAEQKRSPKKQEKPRGMLPLEQLVLKYVVVVCSLDALREFGGLIAQIRQSHQADMTRH
                     LEAVATEHRANLQALTKSQQEHEKVSKEILSAVISIRSNLNENSSPRHKPLDLDQVNAE
                     RALGFGVGYRTALNVFGKLRGITPEEAGSQEVKNMAIREAEEDEYEGSRSFFKKVLDMV
                     KKTMR"
     misc_feature    1445..2125
                     /gene="M1"
                     /locus_tag="HIRRVgp2"
                     /note="Rhabdovirus M1 matrix protein (M1
                     polymerase-associated protein); Region: Rhabdo_M1;
                     pfam03342"
                     /db_xref="CDD:281353"
     gene            2234..2815
                     /gene="M2"
                     /locus_tag="HIRRVgp3"
                     /db_xref="GeneID:2559537"
     CDS             2234..2815
                     /gene="M2"
                     /locus_tag="HIRRVgp3"
                     /codon_start=1
                     /product="matrix protein 2"
                     /protein_id="NP_919032.1"
                     /db_xref="GeneID:2559537"
                     /translation="MSLFKRTKKTILIPPPHLLSGDEDRVTVLNAEGEIKISGKRPTTL
                     DEKIYYSMSLAAAILGGNLHPSFQSLTYLFQQEMEFGSTIEKVNFGSRKPAPLTPIRWQ
                     KPEKCSFRPQPLDKKIPPQIYTVSVEGATITFSGRFLFSASHVGCDDNRVKLAGLDGFI
                     TSPNYQRVKDYYAQETVLALSFEIPTKKGK"
     misc_feature    2255..2758
                     /gene="M2"
                     /locus_tag="HIRRVgp3"
                     /note="Rhabdovirus matrix protein; Region: Rhabdo_matrix;
                     pfam03397"
                     /db_xref="CDD:281400"
     gene            2924..4450
                     /gene="G"
                     /locus_tag="HIRRVgp4"
                     /db_xref="GeneID:2559534"
     CDS             2924..4450
                     /gene="G"
                     /locus_tag="HIRRVgp4"
                     /codon_start=1
                     /product="glycoprotein"
                     /protein_id="NP_919033.1"
                     /db_xref="GeneID:2559534"
                     /translation="MDPRIMYYTVLLTTAARVYGQTIKPGVDSVSDQPTWANPLFTYPV
                     DCPAAKLSKVSPSQLRCPRIFDDENRGLVAYPAVIRSLSVGNNLGDIHTQGEYVHKVLY
                     RTTCSTGFFGGQTIEKALVEMKLAPREVGVYDTTTASALYFPAPRCQWYTDNVHNDLTF
                     YYTTAKSVLRDPYTLGFLDSDFIEGKCSKSPCQTHWSNVVWKGDSGVAACDTGSEIKGH
                     IFVDKTSHHVVKATSYGHHPWGLHRACMITFCGKPWIRTDLGDLIAIEYNGGATLLAFP
                     ACKDTTVGMRGSLDDFAYLDDLVKSSESREECLEAHAEIIATNSVTPYLLSKFRSPHPG
                     INDVYAMHDGSIYHGKCMTVAIDEVSKDRRTYRAHQTSAFVAWGHPFGDEWGGFHGLHG
                     NDTPVIPDLEKYVAQYKVSMMDKMDIRPVPHPSVQILYNDTDTADITIRKIDSFDLQSL
                     NWSFWPSLSALGGVPILLALVFFLYCCMNRRPSMPAAPQEIPMYHLASRG"
     misc_feature    3035..4300
                     /gene="G"
                     /locus_tag="HIRRVgp4"
                     /note="Rhabdovirus spike glycoprotein; Region:
                     Rhabdo_glycop; pfam00974"
                     /db_xref="CDD:425969"
     gene            4528..4863
                     /gene="NV"
                     /locus_tag="HIRRVgp5"
                     /db_xref="GeneID:2559536"
     CDS             4528..4863
                     /gene="NV"
                     /locus_tag="HIRRVgp5"
                     /codon_start=1
                     /product="non-viral protein"
                     /protein_id="NP_919034.1"
                     /db_xref="GeneID:2559536"
                     /translation="MNSKTPSTDIAALKDLLRYKVTVARHGFLFDDGKIVWSEDGDEAW
                     NRLLVVVGALRSSNRMSQALFMDMSITKGDGYLLFSDLQGTNNLQYRTPKFRQYLFPVD
                     EFLPLPR"
     misc_feature    4528..4860
                     /gene="NV"
                     /locus_tag="HIRRVgp5"
                     /note="Rhabdovirus Non-virion protein; Region: Rhabdo_NV;
                     pfam02484"
                     /db_xref="CDD:280620"
     gene            4947..10907
                     /gene="L"
                     /locus_tag="HIRRVgp6"
                     /db_xref="GeneID:2559539"
     CDS             4947..10907
                     /gene="L"
                     /locus_tag="HIRRVgp6"
                     /codon_start=1
                     /product="RNA polymerase"
                     /protein_id="NP_919035.1"
                     /db_xref="GeneID:2559539"
                     /translation="MDFFDLDIEIKQERLPAECSLNSPLNISLSSQLTDRMTPQNENIR
                     RQRERIRTHTKTHSRIKHLSKLDNDSTRLHARLTEDLIKLQHLEVDSPVFDNWALLTSY
                     YAALDYTLPERASFDWGQAAPYWNLYTQLRTILLQSQKIRKKDRGVREIYSCGPLRLEF
                     VEGTVLYFTDKQSGGEFTKSGELPSITPYADFLAWVKIISQRAQAVLMAVILRVTDKGL
                     SPLPESLLSVYQTVDDILKRAGQPAIDLLKLWEPLVITKLGELLGDRFGLEEDFRLTIR
                     GEATRLAKKLAITNGLNRLMTVLDSQTEAQPLFQFFGLFKHFAYPRVFSRDTIQAIQEV
                     SDRPSSISAAEFLHDQCEIRKEFYIRYLKAYHRAPGLDLSALSPSSFLRESLEHGKIPN
                     EKSPHYSNKEWYFIKFTKSIEWPISDTLSTFLSDKAITRDRAAWIEEGHSGRDMSEKRL
                     LLKFIKENFSSVAEIVAAADAIYNNEGDRLIALKVKEMELKIKGRGFGLMTFMPRLLQV
                     LRESIAKKTSKLFPEITMTSSDLDMKKRKFMLSKRSDDRRGFIHINKSLDINKFCTSQR
                     QFNSSAVFSSLDEMMGTFPLFSRVHEIFEKTWIVDGSASDPPDLSHFTRILEECRLHGI
                     EAPHVWADGVFSGLKGGIEGLCQYVWTICLLLRVERVMQKTKLTHYILAQGDNVIITII
                     VPVEIHRDGIISDQESRRLLTLSRNIDLSLESELEKSGLTLKIEETLTSENISIYGKDL
                     HCPQHLTLALKKAASAAIISSEQYQDIPTFLSGLGTSLESLSECVNSKTGAHLFGVLMG
                     VAGWKDLATHQTWRGWRYPYHKAPLSGRVRASDMKIGKGEAVELTIPVMSPRQQGKETL
                     RELLANSLLGSALGMLAFPTPIDLEKRGVGDYITHRLAIARKALLSEKLDPHIEKRVRS
                     ACNLPLSSRVDLSKLFDSPFSLNLATEEDATAVIKRQAKKTLRLQEIGNDKLRAQIGNM
                     DKGIAALDADLAGAETINPRLNHMIRDITDEKESEMFVTKFASARTMRTLAMGDSSEVP
                     IVVLLEKKSQQKELYTIWRARRPHATMWKCSTVLAKGLRDISWGKTIVGVTSPSPIEAM
                     ETTHIDPTDWEDSRSRETLSINYYLSRAGIDEQTAKLTRGSLVPYYGTQTKPLIAKAYL
                     ELKGNPRTNKALLLLSVRESLVKTGSNLDELIMQLCSHALDIDAASLPALRAQEEATAG
                     EGLRGGIKESMSPVGPDNFYTNITHKVFNRKWVTPYHVNIADFIIQGLIETRKHLILNE
                     KMDGLLPLSSVKCTACFRKKEREFFDIPEGPTWKNDSTTSDPAYTYFTTWCDLPRVSTL
                     PTMDQQSATRLLGRGLSLNRPTAGEIITKFYSMSMESQRLLHPVDLLLGYGEGVVFGYI
                     RSQHIHHGALFQTKRETLTNKLRKFILDTKTQHAKQIGYLFQDEDSLHELMAQGLCPYV
                     PRSIPLTITELTNACAITTIRATEVILSAGSRVALMPVQAIDETDVDNSRLAANTMQTI
                     LGDSRPMNPVYLDCDLTTNMTAWESSIELDVLKSENFHIDGLLMDLTARELPISDTPWK
                     QRDWTCSNDPRIIAKGIKTKSLFIHQGVAEALNMTPDLLVVIGGGLGGCAVPYLQEWAD
                     VPLIFATLFDERERISEDGDLVVPPEILVRGMAPRMIERELLEAELCDVTNDGNRRLLT
                     RLVKKNRGKGTVVLIDEIENRGAPESLLQSSLQDLVRRLDKVCTLTSIHTVRESTVEQF
                     AQRTNSIKRDRKTVTLHWNRYNRRDQFEALVIVKGEETRSDYHVSTATAAQAFRKIDEQ
                     LEVEGRLSATRWSLPTLPAREKEILFGYVSSVFLKTNLVLSADDMDRETLLETIEDTAP
                     GLISWKEKLEHRDHAFRSDIDEKGITQDKVFNLICLAWVITGLRYGIWETDAQSIITKT
                     VYITRGPKLCPLGEKPKRVFASFKLQSDKRVEDAKGFLSALLHLEGFFPLGRQ"
     misc_feature    4998..8147
                     /gene="L"
                     /locus_tag="HIRRVgp6"
                     /note="Mononegavirales RNA dependent RNA polymerase;
                     Region: Mononeg_RNA_pol; pfam00946"
                     /db_xref="CDD:395756"
     misc_feature    8178..8864
                     /gene="L"
                     /locus_tag="HIRRVgp6"
                     /note="Mononegavirales mRNA-capping region V; Region:
                     Mononeg_mRNAcap; pfam14318"
                     /db_xref="CDD:405070"
ORIGIN
        1 gtatcaaaaa gataacatac gccaagacta ggagagatgg gggcagggga cagaaaaaaa
       61 tggcacttca gttgtacact gataacgtgt tatagacact agaaaccaag tctaagtgat
      121 atattctgtt tgcgatctct acaacaagat taaaccagaa atcaatatgg cgaaccttaa
      181 ggaagaattt gcaggactcc gaggagtgaa gggaggagcc ctcgaagact ctggcacgga
      241 gtatgatccc accaagatca acctgacgct ctacgggaca gacaagctct ataccctggc
      301 gatcatcaag agggcagtca gtcaggtcgg agggtcccaa accaacaaag cactaggaat
      361 cctttgtgct tttgtcacgt cagagaacaa ccctgacatg acagatgcag cagtcaagct
      421 cctggtggac atgaggttca aggtggacgt ggtgcccgtg gacgacaggc tcggtgacaa
      481 tctggatgac cccaactcaa agctggcgga ggtcctgacg gaagagaaca tggtggacct
      541 ggtgaaaggc cttctgttca cttgtgccct gatggtcaag tacgatgtgg acaagatggc
      601 cacatactgc cagcagaagc tggagcgact ggccaacagt cagggactca acgagctgac
      661 cctgataagc acgagtaggg cagttctggc tcggattggg gcagcggtaa gaccggggca
      721 gaagttaacc aaggccatct acgggatcat tcttatcaac ctgatggatc ccgccactgc
      781 tgccagggca aaggcccttt gtgccatgag gctgagcgga accggaatga ccatggtggg
      841 tctattcaat caggcctcta agaaccttgg agctccacct gcagatctgc tggaagatct
      901 ctgcatgaag tccatcatcg actctgccag gaggattgtc aagctgatga ggatcgttgc
      961 agacgtcgag gacatgaccg caaagtatgc catcatgatg agcaggatgc ttggggatgg
     1021 gtacttcaag tcctacggga tcaatgagaa ctcacggatc acctgtatct tgatgaacat
     1081 caacgagcag tacgatgagg ggacaaccgg aggactggca ggagtcaggg tttcaccccc
     1141 cttccgaaag ctggcaaccg agattgctcg ccttctggtc aaaaagtatg acgggaacgg
     1201 atctgccggg ccaggtgcct cagatcttgt ccgccaggcc gagcaggcag cgcaagagac
     1261 cgagggcgag gatgataagt acgatgagga gggcgaggaa gacggagggg agggagaggg
     1321 gggagaggac gaagagtact actgagaccc ggcatctatg tcgccttggg ttgcctccca
     1381 acattactat tcttagatag aaaaaaatgg cacgtttgtg taaaacaaca atcaacaaat
     1441 cgcaatgtct gataacgaag gagaacagtt ctttgatatt cccaagaatg ctctggacag
     1501 agttgaggca cggacgatgt gtcccaggga ggatggaaag gttgtccgga aacaagcgcc
     1561 tctaaaagag gaaccaagac tggaggcaga gcagaagcgg tctccaaaga agcaggagaa
     1621 accccgggga atgctccctc tggaacaact tgttctgaag tatgtggttg tggtctgctc
     1681 ccttgatgcg ctccgagagt tcggaggact aattgcccag atcaggcagt ctcatcaggc
     1741 cgatatgact cgtcatctgg aggcagtggc aacagagcac cgggccaatc tccaggcgct
     1801 caccaagtct cagcaggagc acgagaaagt ctccaaagag atcctctcgg cagtcatctc
     1861 catccggtcc aacctcaacg agaactccag tccccgacac aaacccctgg acctggacca
     1921 ggtcaatgcg gagagagccc tcggatttgg agtcgggtac cggaccgcct tgaacgtctt
     1981 tggcaaacta cggggaatca caccagaaga ggcaggctcg caagaagtca agaacatggc
     2041 aatcagagag gcagaagaag atgagtatga gggaagcaga agcttcttca agaaggtcct
     2101 cgatatggtc aagaagacca tgaggtagag caagccaaca tcccactcgc caactcccac
     2161 tcccctagat agaaaaaaat ggcacgttag tgtactgttt taacagaaac caaaaccaaa
     2221 gtcgaaagaa accatgtctc tcttcaagcg aaccaagaag accattctga tccctccccc
     2281 tcatctgctt agcggagacg aggaccgggt gacagttcta aatgcagagg gcgagatcaa
     2341 gatctcaggg aagcgaccaa ccaccctcga tgagaagatc tactactcca tgagtctggc
     2401 cgccgccatt ctgggaggga atcttcatcc atctttccaa tctctgacct atctatttca
     2461 gcaggagatg gaattcggga gcaccataga aaaggtcaac tttgggtccc ggaaaccggc
     2521 ccccctgaca cctatcaggt ggcaaaagcc cgagaagtgt tcattcaggc ctcaacccct
     2581 ggacaaaaag atccctcctc agatttacac tgtcagtgtg gagggggcga ccatcacctt
     2641 ctccgggagg tttctctttt cggccagtca tgtggggtgt gacgacaacc gggtcaagct
     2701 ggctggcctg gatggcttca tcacctcacc caactaccaa agagtgaaag actattatgc
     2761 acaggaaact gtcctggcgt tgtccttcga aattccaacc aaaaaaggaa aatagtcaca
     2821 atgactcccc atttaaatcg accctctcaa atctatcaac tcacatcaga tagaaaaaaa
     2881 tggcacattt gtgtgttttc ataacaaaca atcgacactc gtcatggacc ctcgaataat
     2941 gtattacact gttctcctca cgacagctgc cagagtctat ggtcaaacca tcaagcctgg
     3001 agttgacagc gtatccgatc aacccacctg ggcgaatccc ctgtttacat accctgtgga
     3061 ctgtcctgcg gctaagctat ccaaggtgag tccctcacag ttgaggtgcc cacgcatatt
     3121 tgatgatgaa aaccgaggac tcgttgccta ccctgctgtc atcagatccc tatcggtagg
     3181 gaacaatctt ggggacattc atactcaggg ggaatacgtc cacaaggtcc tttaccgaac
     3241 cacatgttca acagggttct ttgggggcca aaccatagag aaggccctag tagagatgaa
     3301 actggccccc agggaggtgg gagtgtatga caccacgaca gcctcagcac tgtacttccc
     3361 agctccaagg tgccaatggt acacggacaa tgtacataac gacctgacat tctactatac
     3421 gaccgccaag agtgtcctta gagatcctta caccctggga ttccttgatt ctgattttat
     3481 tgaagggaag tgctccaagt cgccgtgtca gacccattgg tcaaatgtgg tgtggaaggg
     3541 agactcggga gttgccgcct gtgacacggg gtctgagata aagggtcaca tatttgtgga
     3601 caagacctcc caccatgtcg tcaaggcaac gagctatgga caccacccat ggggacttca
     3661 tcgagcttgc atgattacct tctgtggaaa accatggatc aggacagacc taggggacct
     3721 catcgcaatc gaatacaatg gcggggcgac ccttctcgca ttccctgctt gcaaggacac
     3781 cacggttgga atgagaggga gtcttgacga ctttgcctac ttggatgatc tggtgaagtc
     3841 atctgaaagt cgggaggaat gtctagaggc acatgcggag atcatcgcta ccaatagtgt
     3901 gactccttac ctgctatcca aattcagatc tccccaccca ggaataaacg atgtctacgc
     3961 catgcatgac gggtccatat accacggaaa gtgcatgacc gttgccattg atgaggtttc
     4021 caaagataga cgaacttatc gtgcccacca gacctcagct ttcgtagcat gggggcatcc
     4081 cttcggtgat gaatggggcg ggtttcacgg tcttcatggc aacgatactc ctgtgattcc
     4141 ggatcttgag aaatacgtcg ctcagtacaa ggtgagcatg atggacaaga tggacattcg
     4201 ccccgttccg catcctagtg tccagatact ctacaacgac acagacaccg cagacatcac
     4261 aatcaggaag atagactcgt ttgatctgca atcactcaac tggagcttct ggccatcatt
     4321 gtcagcactg ggaggggttc caatactcct cgccctcgta ttctttctgt actgctgcat
     4381 gaacagaaga ccctccatgc ctgcagcacc ccaagagatc cccatgtacc acctcgccag
     4441 tcgagggtaa caccttccct cacttacctc tacaatccta gatagaaaaa aacggcacat
     4501 atgtctgtgg acctcccaca gccgaccatg aactcaaaaa ccccaagcac cgacatcgca
     4561 gcgttgaagg atctgctgag atacaaagtc acggtggcaa gacatgggtt cttatttgat
     4621 gatggaaaga ttgtttggag cgaagatggg gatgaggcat ggaatagact ccttgttgtt
     4681 gtcggggcat taaggtcctc taacaggatg agtcaggcac tgttcatgga catgagcatc
     4741 accaaggggg acggatatct actcttctcc gacctgcagg gaacaaacaa tttgcagtac
     4801 cggaccccaa aattcaggca atacctgttt ccagtagacg agttcctccc tctccccaga
     4861 tagaaaaaaa tggcacttgt gtgcaaaaac aaaccaagcg aaagacgcga ttaactggac
     4921 cgagacagca acggatccac tacatcatgg atttttttga tttagatata gagatcaagc
     4981 aagagagact ccccgcggag tgctctctca actctcccct caacatctct ctatcatctc
     5041 aactgaccga tcgtatgacc cctcaaaatg aaaacatccg gagacagaga gaaagaatca
     5101 gaacccacac aaagacacac tctcgtatca aacacctatc aaaacttgac aatgactcaa
     5161 ctagactcca tgcccgactt acagaagacc taatcaaact acagcatctt gaagtcgatt
     5221 caccagtctt cgacaattgg gcccttctga catcttacta tgcagcccta gattacactc
     5281 ttccagagag ggcgtcgttc gactggggac aggccgcacc atactggaac ctctacaccc
     5341 aactccggac aatcctcctc cagagtcaaa agatcaggaa aaaagacaga ggggttaggg
     5401 aaatctactc gtgcggccca cttcgccttg aatttgtgga aggcacggta ctgtacttca
     5461 cagacaaaca atcagggggc gaatttacaa aatctggtga attgcccagc atcacaccct
     5521 atgcagactt cctcgcctgg gtaaaaatca tttcccaacg agcacaagct gtcctgatgg
     5581 cagtcattct cagagttaca gataaaggac tctcaccact tccggagtca ctgctctctg
     5641 tctaccagac agttgatgac atcctgaaaa gagctggtca gccagccatt gacctgctga
     5701 aactctggga gcccttagta atcaccaagt tgggagaact cctcggggac agatttgggc
     5761 tcgaggagga ctttcgtctc acaatcagag gggaggccac gagactggcc aaaaaactag
     5821 ccatcaccaa cggactgaac cggttgatga ccgtccttga ttcacaaaca gaagctcagc
     5881 cgttgtttca gttctttgga ctcttcaaac atttcgcgta cccccgagtg ttctcaagag
     5941 acacgattca ggccattcaa gaagtaagcg acagacccag ctcgatctca gcagctgaat
     6001 tccttcatga ccaatgcgag ataagaaagg aattctacat caggtatctc aaggcatacc
     6061 atcgagctcc gggcctggac ctgtcagccc ttagtccctc gtcttttctg agagagagtc
     6121 ttgagcatgg aaaaatccca aacgagaaga gtccccatta ctcaaacaaa gagtggtact
     6181 tcatcaaatt cacaaaaagc attgaatggc ccatcagtga cactctgtca acatttttat
     6241 ccgacaaagc catcacaaga gatcgagcag catggatcga agaaggtcac tcaggtagag
     6301 acatgtcaga aaaacgtctt ctcctcaaat tcatcaaaga aaacttctct agcgtggctg
     6361 aaatcgtagc tgccgccgat gccatctaca acaacgaagg agacagactg atcgcactca
     6421 aggtgaaaga gatggagtta aaaataaagg gacggggatt cgggctcatg actttcatgc
     6481 cccggttact tcaggttctc cgagagagta ttgcaaagaa aaccagcaag ctgtttccgg
     6541 aaatcaccat gacctcatct gacctggata tgaagaaaag aaaattcatg ctgtcaaaac
     6601 gaagcgatga ccgacgtggt ttcatccaca tcaacaagag tctggacata aacaaattct
     6661 gtaccagtca acggcaattc aactcaagtg ccgtgttctc tagtctggat gaaatgatgg
     6721 gaacatttcc tcttttttcc cgggtccacg agattttcga aaaaacgtgg attgtggatg
     6781 gttctgcatc tgatcccccg gatttatccc atttcaccag gattttggaa gagtgccgtc
     6841 tgcatggaat tgaggcccct cacgtctggg cggacggagt attctctgga ctgaagggag
     6901 gaatcgaggg actctgtcaa tatgtgtgga ccatctgcct cctcctcagg gtcgagcgag
     6961 tcatgcagaa gaccaaactc acccactaca ttcttgcaca gggagacaat gtcatcatca
     7021 ccattatagt ccccgtggag atacatcgcg atgggatcat ttcagaccaa gagtcccgtc
     7081 gcctcctgac actgagccga aacatagatc tatccctaga aagtgaactg gaaaagagcg
     7141 ggctgaccct aaagatcgag gagaccctaa cgagtgagaa catttcgatc tatgggaagg
     7201 atcttcattg tccccaacat ctgacgcttg cactcaagaa ggcagcctct gcggcaatca
     7261 tctccagtga acaatatcaa gacatcccca ccttcctgtc tggccttggg accagcctgg
     7321 agtccctctc cgaatgcgtg aatagcaaaa caggggccca tctctttgga gtcttgatgg
     7381 gggtagctgg atggaaggac ctcgccaccc accagacctg gaggggatgg aggtatccct
     7441 atcacaaggc gccactctcg gggagggtcc gagcatctga tatgaaaatt ggaaagggtg
     7501 aagcggttga gctcacgatc ccagtcatgt ctccaagaca acaggggaaa gagaccctaa
     7561 gggaactcct cgccaacagt ctactgggat cagctctcgg aatgctcgcc tttcccactc
     7621 cgatcgacct agagaagcgt ggggtaggag attacatcac acatcgtctg gcgattgcaa
     7681 ggaaagccct cctgagcgag aaactggacc cccatattga aaaacgagta aggtccgcct
     7741 gcaaccttcc cctctcttct cgggtggatc taagcaaatt attcgattcg cccttctcac
     7801 tcaatctagc caccgaagaa gacgcaaccg cggtcattaa gcgacaggca aagaagaccc
     7861 tccgactcca agagatcggg aacgacaagc tgagggccca aattggcaac atggacaagg
     7921 gaatagccgc cctggacgca gacctagccg gggcagagac aatcaatccc cgcctgaacc
     7981 acatgatcag ggacatcacg gatgaaaaag aatcggagat gttcgtaacc aagtttgcgt
     8041 cggcgagaac tatgcggacc ctcgcaatgg gagactcatc cgaggtcccc atagtcgtgc
     8101 tccttgaaaa gaagagccaa caaaaagaac tgtacaccat ctggagagcc agaagacccc
     8161 acgccacgat gtggaaatgc tccacagtcc tggccaaggg cctacgcgac atttcctggg
     8221 ggaagaccat tgtgggagtg acctcaccgt cccctatcga ggctatggaa accacacaca
     8281 ttgatccgac agactgggag gacagcaggt cgagggagac cctctccatt aactactatc
     8341 tttcaagagc ggggattgac gagcagaccg ccaagctcac tcgcggatct ctcgtcccct
     8401 actatggaac tcaaacaaag ccactcatcg caaaagccta cctggaactg aagggcaacc
     8461 ccagaacaaa caaggccctc ctcctgttaa gtgtccggga gtccctggtc aagacaggaa
     8521 gcaatcttga cgaactaatc atgcaacttt gctcacatgc cctcgacatc gacgcagcgt
     8581 ctcttcccgc actccgggca caagaggaag cgacagcagg ggagggtctt cggggtggaa
     8641 taaaagaatc catgtcccct gtcgggcccg acaactttta caccaacatc acccataagg
     8701 tgttcaacag gaagtgggtc acaccatacc atgtcaacat tgccgacttc atcattcagg
     8761 gactcatcga gaccaggaaa cacctcatac tcaatgagaa gatggacgga ctacttcccc
     8821 tgagctcagt caagtgtacc gcctgttttc ggaagaaaga gcgagaattc tttgacattc
     8881 ccgagggacc gacatggaag aatgactcaa cgacctccga tcctgcctac acctatttca
     8941 caacatggtg tgatctccca cgagtctcca ccctgcccac aatggatcag cagtcagcca
     9001 ctcgtctact gggaagggga ctgtctctaa acagaccaac cgcaggcgaa atcatcacga
     9061 agttctactc gatgtccatg gagtctcaga gactcctcca tcccgtggac ctactccttg
     9121 ggtacggaga aggagtggtg tttggataca tcaggagtca acacatccac catggcgcac
     9181 tctttcagac aaagagagag acactcacaa acaaactgcg caaattcatc ttggacacga
     9241 agacacaaca tgccaaacag attggatatc tctttcaaga tgaagactcc ctgcatgagc
     9301 tgatggctca agggctctgc ccctatgttc cacgatcaat tccactaacc atcaccgaac
     9361 tgacgaatgc atgtgcgatc accaccattc gagccacaga agtcatccta agtgcaggct
     9421 ctcgagtcgc tctgatgcca gtccaggcaa tcgacgagac cgacgttgac aacagccgtc
     9481 ttgccgcgaa caccatgcag acaattctag gagattccag gccaatgaat ccggtatacc
     9541 tggactgcga cctcaccacc aacatgaccg catgggagtc atccatcgag ctagacgttc
     9601 tcaagtcaga gaattttcac attgacggac tacttatgga cctcaccgca agggaactcc
     9661 cgatcagcga cacaccatgg aagcagaggg actggacatg ctccaacgac cctcgaatca
     9721 ttgcaaaagg gatcaagacc aagtcactgt tcattcatca gggagtggca gaggcactga
     9781 acatgacccc tgacctattg gtcgtgattg gaggaggcct cggcggctgc gcggttccgt
     9841 atctccagga atgggcagat gtcccactga tattcgcaac tctgtttgac gagagagagc
     9901 gaatctcaga ggacggggac ttggtggttc ctccagaaat tctcgtcaga gggatggccc
     9961 ccaggatgat cgaaagagaa ctactggaag cggagctctg cgatgtcacc aatgacggaa
    10021 atagaagact cctcacacga ctggtcaaga aaaatagggg aaagggaaca gtagtcctca
    10081 tagacgagat agaaaacaga ggggctcccg agtcactcct tcagagctcg ctgcaggatc
    10141 tcgtccggag actcgacaag gtctgcactc tgacctcgat acacactgtc cgggaatcca
    10201 ccgtggaaca atttgcccag agaaccaact ccatcaaaag agacaggaag actgtgaccc
    10261 tgcactggaa ccgctacaat cgaagggatc aatttgaggc tcttgtcatt gtcaagggag
    10321 aggaaacacg ttcagattat cacgtgtcca ctgcgactgc agcacaggcc ttccgcaaga
    10381 tcgacgaaca gctggaggta gaaggacgac tctctgccac aagatggtcc ctcccaactc
    10441 tcccagcccg cgagaaggag atcctattcg gctatgtctc ctctgtcttt ttgaagacga
    10501 atctcgttct ctccgcagat gacatggacc gagaaacact gctagaaacc atcgaggaca
    10561 ctgcaccagg attgatctcc tggaaagaga aactcgagca ccgagatcat gcctttcggt
    10621 cagacatcga cgaaaagggg atcacacagg acaaagtctt caacctcatc tgtctagcct
    10681 gggtcataac cggactacgc tacggaatat gggaaaccga cgcgcaatcc atcatcacca
    10741 agacggtcta catcacccga ggccccaagc tctgccctct tggagaaaaa ccaaaacggg
    10801 tcttcgcatc cttcaaactt caaagtgata agagggtaga ggacgcaaaa ggatttctta
    10861 gcgcgctgct acacctagag ggcttctttc ctcttggtag gcagtagccg gtctgtcccc
    10921 tcccgcagcg cccagggacc cagcacccag atacaaaaaa acgagaccag tgttcccgtt
    10981 cgggaaccca aaaatcacca ccccttcaga acctctctgt tacctttttt atac
//
序列分析