- Scientific Name
- Xanthomonas oryzae
- Common Names
- "Pseudomonas oryzae" Uyeda and Ishiyama in Ishiyama 1926
- Bioproject
- PRJCA004891
- Biosample
- SAMC355065
- Accession No.
- GWHBAYX01000000
- GWH reannotation accession
- GWHRA_BAYX01000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences
- Contact
- Yongli Zhou, zhouylcaas@126.com
- Sequence author(s)
- Yongli Zhou
- Released Date
- 2022-01-02
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- CANU 1.5
- Sequencing & coverage
- Nanopore GridION 169
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBAYX01000000 | GWHRA_BAYX01000000.1 | JS49-6 | Complete genome | 2022-01-02 |
DNA
GFF
RNA
Protein
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,899,497 |
| GC content | 63.73% |
Statistics of Genome Assembly
| Genome size (bp) | 4,899,497 |
| GC content | 63.73% |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 3,584 | 53 | 6 | 142 | 807 | 15 | 4,607 |