- Scientific Name
- Raphanus raphanistrum
- Common Names
- jointed charlock, wild radish; Brassica erucastrum, Rapistrum raphanistrum
- Bioproject
- PRJCA003033
- Biosample
- SAMC199889
- Accession No.
- GWHANWN00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR233079, CRR233080
- GVM variations of the species
- -
- Submitter Organization
- Germplasum Research, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Xixiang Li, lixixiang@caas.cn
- Sequence author(s)
- Xiaohui Zhang
- Released Date
- 2021-08-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- MECAT 1.0
- Sequencing & coverage
- PacBio 66.0
Illumina HiSeq X TEN 127.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Xiaohui Zhang, et al. Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild and weedy radishes. Molecular Plant, 2021.
Statistics of Genome Assembly
| Genome size (bp) | 488,951,571 |
| GC content | 36.91% |
| Genome sequence No. | 97 |
| Maximum genome sequence length (bp) | 70,375,747 |
| Minimum genome sequence length (bp) | 12,378 |
| Average genome sequence length (bp) | 5,040,738 |
| Genome sequence N50 (bp) | 54,543,815 |
| Genome sequence N90 (bp) | 32,165,313 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 48,698 | 48,698 |