- Scientific Name
- Raphanus sativus var. raphanistroides
- Common Names
- East Asian wild radish, oil radish; Raphanus raphanistroides, Raphanus sativus f. raphanistroides
- Bioproject
- PRJCA003033
- Biosample
- SAMC199886
- Accession No.
- GWHANWS00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR233066, CRR233065, CRR233068, CRR233067, CRR233062, more
- GVM variations of the species
- -
- Submitter Organization
- Germplasum Research, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Xixiang Li, lixixiang@caas.cn
- Sequence author(s)
- Xiaohui Zhang
- Released Date
- 2021-08-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- MECAT 1.0
- Sequencing & coverage
- PacBio 65.0
Illumina HiSeq X TEN 94.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Xiaohui Zhang, et al. Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild and weedy radishes. Molecular Plant, 2021.
Statistics of Genome Assembly
| Genome size (bp) | 486,349,169 |
| GC content | 36.89% |
| Genome sequence No. | 64 |
| Maximum genome sequence length (bp) | 64,744,228 |
| Minimum genome sequence length (bp) | 10,584 |
| Average genome sequence length (bp) | 7,599,206 |
| Genome sequence N50 (bp) | 59,370,904 |
| Genome sequence N90 (bp) | 40,187,009 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 48,342 | 48,342 |