- Scientific Name
- Misgurnus anguillicaudatus
- Common Names
- dojo loach, golden dojo loach, Japanese weatherfish, oriental weatherloach, weather loach; oriental weatherfish; Cobitis anguillicaudata
- Bioproject
- PRJCA024750
- Biosample
- SAMC3481865
- Accession No.
- GWHERQH00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR1184675
- GVM variations of the species
- -
- Submitter Organization
- college of fisheries, Huazhong Agricultural University
- Contact
- qingshan Li(1141869121@qq.com)
- Sequence author(s)
- qingshan Li
- Released Date
- 2024-04-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- hifiasm 0.16.1
- Sequencing & coverage
- PacBio 30.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Bing Sun, et al. Chromosome-scale and haplotype-resolved genome assembly of the autotetraploid Misgurnus anguillicaudatus. Scientific data. 2024, 11(1): 1059.
Statistics of Genome Assembly
| Genome size (bp) | 1,130,186,086 |
| GC content | 38.03% |
| Chromosomes sequence No. | 25 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 22,785 | 22,785 |
| Total | 22,785 | 22,785 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 1,166 | 1,166 |
| chr10 | 773 | 773 |
| chr11 | 760 | 760 |
| chr12 | 902 | 902 |
| chr13 | 979 | 979 |
| chr14 | 835 | 835 |
| chr15 | 871 | 871 |
| chr16 | 778 | 778 |
| chr17 | 800 | 800 |
| chr18 | 783 | 783 |
| chr19 | 981 | 981 |
| chr2 | 1,262 | 1,262 |
| chr20 | 695 | 695 |
| chr21 | 742 | 742 |
| chr22 | 910 | 910 |
| chr23 | 842 | 842 |
| chr24 | 667 | 667 |
| chr25 | 894 | 894 |
| chr3 | 958 | 958 |
| chr4 | 1,197 | 1,197 |
| chr5 | 1,198 | 1,198 |
| chr6 | 999 | 999 |
| chr7 | 898 | 898 |
| chr8 | 1,039 | 1,039 |
| chr9 | 856 | 856 |
| Total | 22,785 | 22,785 |