- Scientific Name
- Euscaphis japonica
- Common Names
- []
- Bioproject
- PRJCA005268
- Biosample
- SAMC375701
- Accession No.
- GWHBCHS00000000
- GWH reannotation accession
- -
- GSA raw reads
- GVM variations of the species
- (SNP), (Indel)
- Submitter Organization
- Forestry College, Fujian Agriculture and Forestry University
- Contact
- Sun Wei-Hong, W-H.S@outlook.com
- Sequence author(s)
- Zou Shuang-Quan
- Released Date
- 2021-12-23
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 2.0
- Sequencing & coverage
- PacBio 102.0
- Download
- DNA GFF RNA Protein
- Publication(s)
- Wei-Hong Sun, et al. The Euscaphis japonica genome and the evolution of malvids. The Plant Journal. 2021, 108(5): 1382-1399.
Statistics of Genome Assembly
| Genome size (bp) | 1,199,999,138 |
| GC content | 32.86% |
| Scaffold sequence No. | 122 |
| Maximum scaffold sequence length (bp) | 146,224,083 |
| Minimum scaffold sequence length (bp) | 13,716 |
| Average scaffold sequence length (bp) | 9,836,059 |
| Scaffold N50 (bp) | 98,652,080 |
| Scaffold N90 (bp) | 71,790,553 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 32,856 | 32,856 |