- Scientific Name
- Zea mays
- Common Names
- maize; Zea mays var. japonica
- Bioproject
- PRJEB32225
- Biosample
- SAMEA5569141
- Accession No.
- GCA_902167145.1
- RefSeq Accession No.
- GCF_902167145.1
- RefSeq vs GenBank similarity
- different
- Source
- NCBI
- External Links
- NCBI
- Submitter Organization
- MaizeGDB
- Released Date
- 2024-10-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Download
- DNA
- RefSeq Download
- RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein
- Publication(s) -
| Assembly Accession | RefSeq Accession | RefSeq vs GenBank similarity | Assembly Name | Assembly Level | Release Date | Download Files |
|---|---|---|---|---|---|---|
| GCA_902167145.1 | GCF_902167145.1 | different | Zm-B73-REFERENCE-NAM-5.0 | Draft genome in scaffold level | 2020-03-21 | DNA RefSeq DNA RefSeq GFF RefSeq RNA RefSeq Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,182,075,994 |
| Chromosomes, organellas and plasmids sequnece No. | 10 |
| Genome sequence No. | 685 |
| GC content | 47 |
| Scaffold sequence No. | 685 |
| Scaffold L50 | 5 |
| Scaffold N50 (bp) | 226,353,449 |
| Scaffold N75 (bp) | 181,357,234 |
| Scaffold N90 (bp) | 163,004,744 |
| Contig sequence No. | 1,393 |
| Contig L50 | 16 |
| Contig N50 (bp) | 47,037,903 |
| Unique components No. | 695 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 708 |
| Ns gap sequence region length (bp) | 3,807,886 |
| Gaps No. between scaffolds | 0 |
Statistics of Genome Assembly
| Genome size (bp) | 2,182,786,008 |
| Chromosomes, organellas and plasmids sequnece No. | 12 |
| Genome sequence No. | 687 |
| GC content | 47 |
| Scaffold sequence No. | 687 |
| Scaffold L50 | 5 |
| Scaffold N50 (bp) | 226,353,449 |
| Scaffold N75 (bp) | 181,357,234 |
| Scaffold N90 (bp) | 163,004,744 |
| Contig sequence No. | 1,395 |
| Contig L50 | 16 |
| Contig N50 (bp) | 47,037,903 |
| Unique components No. | 697 |
| No. of regions with alternate loci or patches | 0 |
| Ns gap sequence No. (bp) | 708 |
| Ns gap sequence region length (bp) | 3,807,886 |
| Gaps No. between scaffolds | 0 |
Annotation of Whole Genome Assembly
| Protein | trna | rrna | ncrna | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 34337 | 1366 | 2440 | asse6560 | 5194 | 0 | 49897 |