HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC00000017

Dataset Information

Omics:
Single cell RNA-seq
Omics Detail:
10x Genomics
Species:
Human
Organ:
Fetal liver
Cell Number:
94187
Gene Number:
27080
Genome Reference:
GRCh38
Data Normalization:
SCT
Sequencing Platform:
Illumina HiSeq 4000
Cell Sorting Strategies:
live, single, CD45+ or CD45− FACS-isolated cells

Publication

Decoding human fetal liver haematopoiesis.

Popescu DM, Botting RA, Stephenson E, Green K, Webb S, Jardine L, Calderbank EF, Polanski K, Goh I, Efremova M, Acres M, Maunder D, Vegh P, Gitton Y, Park JE, Vento-Tormo R, Miao Z, Dixon D, Rowell R, McDonald D, Fletcher J, Poyner E, Reynolds G, Mather M, Moldovan C, Mamanova L, Greig F, Young MD, Meyer KB, Lisgo S, Bacardit J, Fuller A, Millar B, Innes B, Lindsay S, Stubbington MJT, Kowalczyk MS, Li B, Ashenberg O, Tabaka M, Dionne D, Tickle TL, Slyper M, Rozenblatt-Rosen O, Filby A, Carey P, Villani AC, Roy A, Regev A, Chédotal A, Roberts I, Göttgens B, Behjati S, Laurenti E, Teichmann SA, Haniffa M.
Volume:574 Issue:7778 Nature | 2019-10-09 | [31597962]

Visualization

Annotation

Gene Expression (Feature plot)

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Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

Species Dataset Gene P.value logFC adj.P.val Stage Cell type Cluster

GO Enrichment

Cell Interaction

Species Stage Dataset Source Target Communication probability P value Ligand Receptor Interact Name