Dataset - HemAtlas

HemAtlas

HemSC00000048

Dataset Information

Omics:

Single cell RNA-seq

Omics Detail:

10x Genomics

Species:

Zebrafish

Organ:

CHT (caudal hematopoietic tissue)

Cell Number:

4358

Gene Number:

19253

Genome Reference:

danRer11

Data Normalization:

SCT

Sequencing Platform:

10x Genomics

Cell Sorting Strategies:

kdrl:mCherry+ cells, CD41:GFP+ cells and 50,000 double negative cells from the tails of 55 hpf transgenic embryos

Publication

A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-dimensional RNA-Seq Analysis.

Xue Y, Liu D, Cui G, Ding Y, Ai D, Gao S, Zhang Y, Suo S, Wang X, Lv P, Zhou C, Li Y, Chen X, Peng G, Jing N, Han JJ, Liu F.
Volume:27 Issue:5 Cell reports | 2019-04-01 | [31042481]

Visualization

Select Gene(s):

Please select gene!

Select Gene(s):

Species	Dataset	Gene	P.value	logFC	adj.P.val	Stage	Cell type	Cluster

Species	Stage	Dataset	Source	Target	Communication probability	P value	Ligand	Receptor	Interact Name

HemAtlas
Mapping developmental hematopoiesis across stages, species and models

HemSC00000048

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas Mapping developmental hematopoiesis across stages, species and models

HemSC00000048

Dataset Information

Publication

Visualization

Annotation

Gene Expression (Feature plot)

Gene Expression (Violin plot)

Select Gene(s):

Gene Expression (Dot plot)

Differentially Expressed Genes

GO Enrichment

Cell Interaction

HemAtlas
Mapping developmental hematopoiesis across stages, species and models