LncBook 2.0 Integrating human long non-coding RNAs with multi-omics annotations

Gene Summary

Gene ID HSALNG0026959
Gene Symbol -
Chromosome chr3
Start Site 76,439,134
End Site 76,439,590
Strand +
Classification Sense
Gene Length (nt) 457
Exon Length (nt) 336
UCSC Genome Browser
Assembly hg38
Localization -
Tissue/Cell specificity Melanocyte of Skin

Transcript Information

Transcript ID Chromosome Strand Start Site End Site Transcript Length Exon Length Exon Number Classification Alias Sequence

Coding Potential

Transcript ID LGC CPAT CPC2 PLEK

Conservation

Gene Homology Summary

Alignment Details

Species Common Name Assembly  Conservation Degree  Homologous Gene ID Homologous Gene Type Alignment Length  Identity  Synteny 

Variation

Variant Name dbSNP ID COSMIC ClinVar GWAS Trait
Mutation ID  Variation Effect  Primary Site  Allele ID Variation Effect  Disease Name

Methylation

Methylation Region  Autism RTT ALL CLL AML MB ESCC BLCA BRCA COAD LUAD LUSC READ STAD UCEC Liver cancer

Expression

Featured Tags Identified across 9 Biological Contexts

Normal Tissue/Cell Line Organ Development Preimplantation Embryo Cell Differentiation Subcellular Localization Exosome Cancer Cell Line Virus Infection Circadian Rhythm

Maximum TPM across 9 Biological Contexts

Normal Tissue/Cell Line Organ Development Preimplantation Embryo Cell Differentiation Subcellular Localization Exosome Cancer Cell Line Virus Infection Circadian Rhythm

Small Protein

Transcript ID SmProt ID  Small Protein Loci Small Protein Sequence Small Protein Length Experimental Evidence 

Interaction

LncRNA-miRNA Interaction

Transcript ID miRNA ID Binding Start Binding End Energy  Software Evidence

LncRNA-Protein Interaction

Transcript ID RNA Binding Protein Cell Line Peak Start Peak End Peak Length