LncBook 2.0 Integration and multi-omics annotation of human long non-coding RNAs

Gene Summary

Gene ID HSALNG0084905
Gene Symbol MALAT1
Chromosome chr11
Start Site 65,497,679
End Site 65,508,465
Strand +
Classification Intergenic
Gene Length (nt) 10,787
Exon Length (nt) 10,787
UCSC Genome Browser
Assembly hg38

Transcript Information

Transcript ID Chromosome Strand Start Site End Site Transcript Length Exon Length Exon Number Classification Alias Sequence

Coding Potential

Transcript ID LGC CPAT CPC2 PLEK

Conservation

Gene Homology Summary

Alignment Details

Species Common Name Assembly Conserved  Homologous Gene ID Homologous Gene Type Alignment Length  Identity  Conserved (Q50)  Snyteny 

Variation

Variant Name dbSNP ID COSMIC ClinVar GWAS Trait
Mutation ID  Effect  Tumor  Allele ID Effect Disease

Methylation

Location Autism RTT ALL CLL AML MB ESCC BLCA BRCA COAD LUAD LUSC READ STAD UCEC Liver cancer

Expression

Featured tags identified across 9 contexts

Normal Tissue/Cell Line Organ Development Preimplantation Embryo Cell Differentiation Subcellular Localization Exosome Cancer Cell Line Virus Infection Circadian Rhythm

Max TPM across 9 contexts

Normal Tissue/Cell Line Organ Development Preimplantation Embryo Cell Differentiation Subcellular Localization Exosome Cancer Cell Line Virus Infection Circadian Rhythm

Small Protein

Transcript ID SmProt ID  Small Protein Loci Small Protein Sequence Evidence

Interaction

Transcript ID miRNA ID Binding Start Binding End Score  Energy