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LncBook 2.0 Integrating human long non-coding RNAs with multi-omics annotations

Gene Summary

Gene ID	HSALNG0084905
Gene Symbol	MALAT1
Chromosome	chr11
Start Site	65,497,679
End Site	65,508,465
Strand	+

Classification	Intergenic
Gene Length (nt)	10,787
Exon Length (nt)	10,787
UCSC Genome Browser
Assembly	hg38
Localization	ER Lumen,Nuclear Lamina,Mitochondrial Matrix,Nucleolus,Nucleus
Tissue/Cell specificity	-

Transcript ID	Chromosome	Strand	Start Site	End Site	Transcript Length	Exon Length	Exon Number	Classification	Alias	Sequence

Transcript ID	LGC	CPAT	CPC2	PLEK

Gene Homology Summary

Age	#Present in Species	Homologous Protein-coding Genes	Homologous Non-coding Genes

Alignment Details

Species	Common Name	Assembly	Conservation Degree	Homologous Gene ID	Homologous Gene Type	Alignment Length	Identity	Synteny

Variant Name	dbSNP ID	COSMIC			ClinVar			GWAS Trait
Variant Name	dbSNP ID	Mutation ID	Variation Effect	Primary Site	Allele ID	Variation Effect	Disease Name	GWAS Trait

Methylation Region	Autism	RTT	ALL	CLL	AML	MB	ESCC	BLCA	BRCA	COAD	LUAD	LUSC	READ	STAD	UCEC	Liver cancer

Featured Tags Identified across 9 Biological Contexts

Normal Tissue/Cell Line	Organ Development	Preimplantation Embryo	Cell Differentiation	Subcellular Localization	Exosome	Cancer Cell Line	Virus Infection	Circadian Rhythm

Maximum TPM across 9 Biological Contexts

Normal Tissue/Cell Line	Organ Development	Preimplantation Embryo	Cell Differentiation	Subcellular Localization	Exosome	Cancer Cell Line	Virus Infection	Circadian Rhythm

Transcript ID	SmProt ID	Small Protein Loci	Small Protein Sequence	Small Protein Length	Experimental Evidence

LncRNA-miRNA Interaction

Transcript ID	miRNA ID	Binding Start	Binding End	Energy	Software Evidence

LncRNA-Protein Interaction

Transcript ID	RNA Binding Protein	Cell Line	Peak Start	Peak End	Peak Length