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Locus name | AT2G25440 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Protein degradation/modification:protein kinase and phosphatases |
Effect for Senescence | unclear |
Gene Description | leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to NL0E [Lycopersicon esculentum] gi|4235643|gb|AAD13303 |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT2G25440.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT2G25440.1 miRNA: ath-miR856 miRNA: ath-miR856 mfe: -23.7 kcal/mol p-value: 0.004558
position: 1918 target 5' C U U 3' CUGGA UUGUUGGU GGAUU GACUU AAUAACCA CCUAA miRNA 3' C C U U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_130149 | |
Cross Link | |
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