Basic information
Locus name	AT5G45800
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:protein kinase and phosphatases
Effect for Senescence	unclear
Gene Description	leucine-rich repeat transmembrane protein kinase, putative
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process protein phosphorylation molecular function protein binding protein kinase activity
Sequence	AT5G45800.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G45800.1  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -29.0 kcal/mol  p-value: 0.020967  position:  55  target 5' U   U   U            C  U 3'             CUC CUC CUCUCUAUCUUU UC              GAG GAG GAGGGAUAGGAG AG   miRNA  3'                      U    5'  target: AT5G45800.1  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -29.0 kcal/mol  p-value: 0.021551  position:  55  target 5' U   U   U            C  U 3'             CUC CUC CUCUCUAUCUUU UC              GAG GAG GAGGGAUAGGAG AG   miRNA  3'                      U    5'  target: AT5G45800.1  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -29.0 kcal/mol  p-value: 0.020477  position:  55  target 5' U   U   U            C  U 3'             CUC CUC CUCUCUAUCUUU UC              GAG GAG GAGGGAUAGGAG AG   miRNA  3'                      U    5'  target: AT5G45800.1  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -29.0 kcal/mol  p-value: 0.022587  position:  55  target 5' U   U   U            C  U 3'             CUC CUC CUCUCUAUCUUU UC              GAG GAG GAGGGAUAGGAG AG   miRNA  3'                      U    5'  target: AT5G45800.1  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -29.0 kcal/mol  p-value: 0.022534  position:  55  target 5' U   U   U            C  U 3'             CUC CUC CUCUCUAUCUUU UC              GAG GAG GAGGGAUAGGAG AG   miRNA  3'                      U    5'
Ortholog Group
Ortholog Groups: OG5_178102	Accession Taxon NP_199392 ( AT5G45800 ) Arabidopsis thaliana NP_001046403 Oryza sativa Japonica Group NP_001057813 Oryza sativa Japonica Group 30026.m001440 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF52058 6.8E-36 33 239 No hit NA PANTHER PTHR24420 0.0 56 662 No hit NA Pfam PF13855 1.7E-7 70 116 No hit NA SMART SM00369 5.4 79 103 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 6.0 81 103 IPR001611 Leucine-rich repeat PRINTS PR00019 1.9E-5 82 95 No hit NA SMART SM00369 390.0 130 151 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 4.8 132 153 IPR001611 Leucine-rich repeat PRINTS PR00019 1.9E-5 152 165 No hit NA SMART SM00369 1.1 152 175 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.0 154 175 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 7.7 154 176 IPR001611 Leucine-rich repeat Pfam PF13855 2.2E-7 177 235 No hit NA ProSiteProfiles PS51450 5.4 177 199 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 4.9 200 223 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 5.5 224 245 IPR001611 Leucine-rich repeat SUPERFAMILY SSF56112 1.4E-47 383 658 IPR011009 Protein kinase-like domain ProSiteProfiles PS50011 19.6 395 661 IPR000719 Protein kinase, catalytic domain Pfam PF07714 8.3E-23 399 569 IPR001245 Serine-threonine/tyrosine-protein kinase catalytic domain Pfam PF07714 1.1E-4 571 655 IPR001245 Serine-threonine/tyrosine-protein kinase catalytic domain