Basic information
Locus name	AT3G47090
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:protein kinase and phosphatases
Effect for Senescence	unclear
Gene Description	leucine-rich repeat transmembrane protein kinase, putative receptor kinase-like protein (Xa21),
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process protein phosphorylation molecular function ATP binding protein binding protein kinase activity
Sequence	AT3G47090.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G47090.1  miRNA: ath-miR159a miRNA: ath-miR159a mfe: -26.4 kcal/mol  p-value: 0.043677  position:  2603  target 5' A    U               C 3'             GGAG CUUUCUUCAA CCAA              UCUC GAGGGAAGUU GGUU   miRNA  3' A               A    U 5'  target: AT3G47090.1  miRNA: ath-miR159b miRNA: ath-miR159b mfe: -26.3 kcal/mol  p-value: 0.050210  position:  2602  target 5' C     U               C 3'             AGGAG CUUUCUUCAA CCAA              UUCUC GAGGGAAGUU GGUU   miRNA  3'                  A    U 5'  target: AT3G47090.1  miRNA: ath-miR159c miRNA: ath-miR159c mfe: -29.0 kcal/mol  p-value: 0.019653  position:  2602  target 5' C     U               C 3'             AGGAG CUUUCUUCAA CCAA              UCCUC GAGGGAAGUU GGUU   miRNA  3'                  A    U 5'  target: AT3G47090.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -24.0 kcal/mol  p-value: 0.066739  position:  1843  target 5' G       U           A 3'             GAAGC A CAAGGAACUGA              CUUUG U GUUCUUUGACU   miRNA  3' A     C U           A 5'
Ortholog Group
Ortholog Groups: OG5_128518	Accession Taxon NP_001154317 Arabidopsis thaliana NP_001154318 Arabidopsis thaliana NP_172219 Arabidopsis thaliana NP_176115 Arabidopsis thaliana NP_177557 Arabidopsis thaliana NP_177558 Arabidopsis thaliana NP_177559 Arabidopsis thaliana NP_180117 Arabidopsis thaliana NP_190293 ( AT3G47090 ) Arabidopsis thaliana NP_190295 Arabidopsis thaliana NP_190342 Arabidopsis thaliana NP_190892 Arabidopsis thaliana NP_197548 Arabidopsis thaliana NP_199740 Arabidopsis thaliana NP_566892 Arabidopsis thaliana NP_001042027 Oryza sativa Japonica Group NP_001042043 Oryza sativa Japonica Group NP_001042046 Oryza sativa Japonica Group NP_001042048 Oryza sativa Japonica Group NP_001042050 Oryza sativa Japonica Group NP_001042475 Oryza sativa Japonica Group NP_001043949 Oryza sativa Japonica Group NP_001043950 Oryza sativa Japonica Group NP_001046267 Oryza sativa Japonica Group NP_001046272 Oryza sativa Japonica Group NP_001046288 Oryza sativa Japonica Group NP_001046291 Oryza sativa Japonica Group NP_001046369 Oryza sativa Japonica Group NP_001047429 Oryza sativa Japonica Group NP_001047431 Oryza sativa Japonica Group NP_001047432 Oryza sativa Japonica Group NP_001047519 Oryza sativa Japonica Group NP_001052283 Oryza sativa Japonica Group NP_001052285 Oryza sativa Japonica Group NP_001054072 Oryza sativa Japonica Group NP_001054073 Oryza sativa Japonica Group NP_001054074 Oryza sativa Japonica Group NP_001057363 Oryza sativa Japonica Group NP_001057939 Oryza sativa Japonica Group NP_001057950 Oryza sativa Japonica Group NP_001057953 Oryza sativa Japonica Group NP_001057957 Oryza sativa Japonica Group NP_001058311 Oryza sativa Japonica Group NP_001058786 Oryza sativa Japonica Group NP_001061361 Oryza sativa Japonica Group NP_001061362 Oryza sativa Japonica Group NP_001064374 Oryza sativa Japonica Group NP_001064468 Oryza sativa Japonica Group NP_001065866 Oryza sativa Japonica Group NP_001065867 Oryza sativa Japonica Group NP_001065869 Oryza sativa Japonica Group NP_001065870 Oryza sativa Japonica Group NP_001065871 Oryza sativa Japonica Group NP_001065873 Oryza sativa Japonica Group NP_001065874 Oryza sativa Japonica Group NP_001067474 Oryza sativa Japonica Group NP_001067924 Oryza sativa Japonica Group NP_001068117 Oryza sativa Japonica Group NP_001068118 Oryza sativa Japonica Group NP_001068119 Oryza sativa Japonica Group NP_001068309 Oryza sativa Japonica Group NP_001068496 Oryza sativa Japonica Group NP_001068498 Oryza sativa Japonica Group NP_001068499 Oryza sativa Japonica Group NP_001068506 Oryza sativa Japonica Group NP_001068507 Oryza sativa Japonica Group 27622.m000146 Ricinus communis 27732.m000285 Ricinus communis 28076.m000429 Ricinus communis 28612.m000125 Ricinus communis 29489.m000178 Ricinus communis 29630.m000826 Ricinus communis 29643.m000340 Ricinus communis 29643.m000341 Ricinus communis 29669.m000833 Ricinus communis 29685.m000487 Ricinus communis 29685.m000489 Ricinus communis 29728.m000802 Ricinus communis 29728.m000805 Ricinus communis 29745.m000369 Ricinus communis 29835.m000647 Ricinus communis 29841.m002899 Ricinus communis 29841.m002901 Ricinus communis 29991.m000651 Ricinus communis 29991.m000654 Ricinus communis 29991.m000656 Ricinus communis 30071.m000435 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF08263 3.2E-7 23 61 IPR013210 Leucine-rich repeat-containing N-terminal, type 2 SUPERFAMILY SSF52047 5.3E-54 70 376 No hit NA SMART SM00369 73.0 89 113 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.4 92 113 IPR001611 Leucine-rich repeat PANTHER PTHR24420 0.0 96 1005 No hit NA SMART SM00369 57.0 185 209 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 1.1 187 206 IPR001611 Leucine-rich repeat SMART SM00369 150.0 258 281 IPR003591 Leucine-rich repeat, typical subtype SMART SM00369 160.0 306 331 IPR003591 Leucine-rich repeat, typical subtype SUPERFAMILY SSF52058 1.2E-55 362 615 No hit NA SMART SM00369 23.0 433 457 IPR003591 Leucine-rich repeat, typical subtype Pfam PF13855 1.6E-6 435 494 No hit NA SMART SM00369 17.0 505 529 IPR003591 Leucine-rich repeat, typical subtype SMART SM00369 42.0 576 601 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.3 578 596 IPR001611 Leucine-rich repeat SUPERFAMILY SSF56112 4.6E-68 674 993 IPR011009 Protein kinase-like domain ProSiteProfiles PS50011 36.0 701 1001 IPR000719 Protein kinase, catalytic domain SMART SM00220 1.9E-29 701 1001 IPR002290 Serine/threonine- / dual specificity protein kinase, catalytic domain Pfam PF00069 3.1E-40 704 923 IPR000719 Protein kinase, catalytic domain ProSitePatterns PS00107 NA 707 730 IPR017441 Protein kinase, ATP binding site ProSitePatterns PS00108 NA 834 846 IPR008271 Serine/threonine-protein kinase, active site
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787