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Locus name | AT4G04490 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Protein degradation/modification:protein kinase and phosphatases |
Effect for Senescence | unclear |
Gene Description | protein kinase family protein contains Pfam PF00069: Protein kinase domain |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT4G04490.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT4G04490.1 miRNA: ath-miR2111a miRNA: ath-miR2111a mfe: -25.2 kcal/mol p-value: 0.035674
position: 1445 target 5' C G G U 3' AGACUUUGGGAUG C AGGUUG UUUGGAGUCCUAC G UCUAAU miRNA 3' A 5'
target: AT4G04490.1 miRNA: ath-miR2111b miRNA: ath-miR2111b mfe: -25.2 kcal/mol p-value: 0.034260
position: 1445 target 5' C G G U 3' AGACUUUGGGAUG C AGGUUG UUUGGAGUCCUAC G UCUAAU miRNA 3' A 5'
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Ortholog Group | |
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Ortholog Groups: OG5_164307 | |
Cross Link | |
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Localization | plasma membrane |
Evidence | SUBAcon |
Pubmed ID | 23180787 |