Basic information
Locus name	AT5G55560
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:protein kinase and phosphatases
Effect for Senescence	unclear
Gene Description	protein kinase family protein contains protein kinase domain, Pfam:PF00069
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process protein phosphorylation molecular function ATP binding protein kinase activity
Sequence	AT5G55560.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G55560.1  miRNA: ath-miR168a miRNA: ath-miR168a mfe: -29.9 kcal/mol  p-value: 0.010952  position:  727  target 5' C      G      G   A  A 3'             UCCUGA CUGUAC AGG GA              AGGGCU GACGUG UUC CU   miRNA  3' A      G      G   G    5'  target: AT5G55560.1  miRNA: ath-miR168b miRNA: ath-miR168b mfe: -29.9 kcal/mol  p-value: 0.015795  position:  727  target 5' C      G      G   A  A 3'             UCCUGA CUGUAC AGG GA              AGGGCU GACGUG UUC CU   miRNA  3' A      G      G   G    5'
Ortholog Group
Ortholog Groups: OG5_190721	Accession Taxon NP_200367 ( AT5G55560 ) Arabidopsis thaliana NP_001060118 Oryza sativa Japonica Group 27613.m000637 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13902 1.8E-215 1 289 No hit NA ProSiteProfiles PS50011 40.7 31 289 IPR000719 Protein kinase, catalytic domain SUPERFAMILY SSF56112 1.8E-63 33 297 IPR011009 Protein kinase-like domain Pfam PF00069 1.0E-51 34 289 IPR000719 Protein kinase, catalytic domain