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Locus name | AT1G72770 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Protein degradation/modification:protein kinase and phosphatases |
Effect for Senescence | unclear |
Gene Description | protein phosphatase 2C P2C-HA / PP2C P2C-HA (P2C-HA) identical to protein phosphatase 2C (AtP2C-HA) GB:AJ003119 |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT1G72770.1 | Genomic | mRNA | CDS | Protein AT1G72770.2 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT1G72770.1 miRNA: ath-miR773 miRNA: ath-miR773 mfe: -26.8 kcal/mol p-value: 0.021363
position: 1673 target 5' U U G 3' AGA AAA GCUGGAGGCAAA UCU UUU CGACCUUCGUUU miRNA 3' C G U 5'
target: AT1G72770.1 miRNA: ath-miR847 miRNA: ath-miR847 mfe: -26.9 kcal/mol p-value: 0.023122
position: 1808 target 5' G C U 3' GUCAAG AGAAGA GAGUG UAGUUC UCUUCU CUCAC miRNA 3' G U C U 5'
target: AT1G72770.2 miRNA: ath-miR773 miRNA: ath-miR773 mfe: -26.8 kcal/mol p-value: 0.022190
position: 1669 target 5' U U G 3' AGA AAA GCUGGAGGCAAA UCU UUU CGACCUUCGUUU miRNA 3' C G U 5'
target: AT1G72770.2 miRNA: ath-miR847 miRNA: ath-miR847 mfe: -26.9 kcal/mol p-value: 0.023990
position: 1927 target 5' G C U 3' GUCAAG AGAAGA GAGUG UAGUUC UCUUCU CUCAC miRNA 3' G U C U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_139205 | |
Cross Link | |
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Localization | cytosol |
Evidence | SUBAcon |
Pubmed ID | 23180787 |