Basic information
Locus name	AT5G38240
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:protein kinase and phosphatases
Effect for Senescence	unclear
Gene Description	serine/threonine protein kinase, putative similar to receptor serine/threonine kinase
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process protein phosphorylation molecular function ATP binding polysaccharide binding protein kinase activity protein serine/threonine kinase activity
Sequence	AT5G38240.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_140014	Accession Taxon NP_176860 Arabidopsis thaliana NP_176863 Arabidopsis thaliana NP_176864 Arabidopsis thaliana NP_176865 Arabidopsis thaliana NP_176871 Arabidopsis thaliana NP_198637 Arabidopsis thaliana NP_198640 ( AT5G38240 ) Arabidopsis thaliana NP_198641 Arabidopsis thaliana NP_198642 Arabidopsis thaliana NP_001043925 Oryza sativa Japonica Group NP_001043929 Oryza sativa Japonica Group NP_001056243 Oryza sativa Japonica Group NP_001056244 Oryza sativa Japonica Group 30205.m001615 Ricinus communis 30205.m001621 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF13947 1.8E-6 40 100 IPR025287 Wall-associated receptor kinase galacturonan-binding domain PANTHER PTHR24420 5.5E-194 279 583 No hit NA ProSiteProfiles PS50011 35.4 281 563 IPR000719 Protein kinase, catalytic domain SMART SM00220 1.3E-25 281 548 IPR002290 Serine/threonine- / dual specificity protein kinase, catalytic domain Pfam PF07714 7.9E-44 284 546 IPR001245 Serine-threonine/tyrosine-protein kinase catalytic domain SUPERFAMILY SSF56112 4.1E-66 284 548 IPR011009 Protein kinase-like domain ProSitePatterns PS00107 NA 287 309 IPR017441 Protein kinase, ATP binding site ProSitePatterns PS00108 NA 394 406 IPR008271 Serine/threonine-protein kinase, active site