Leaf Senescence DataBase

Basic information

Locus name

AT2G19130

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Protein degradation/modification:protein kinase and phosphatases

Effect for Senescence

unclear

Gene Description

S-locus lectin protein kinase family protein contains Pfam domains PF00954: S-locus glycoprotein family, PF00069: Protein kinase domain and PF01453: Lectin (probable mannose binding)

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	protein phosphorylation recognition of pollen
molecular function	ATP binding protein kinase activity protein serine/threonine kinase activity

Sequence

AT2G19130.1 | Genomic | mRNA | CDS | Protein

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT2G19130.1
miRNA: ath-miR447a
miRNA: ath-miR447a
mfe: -25.7 kcal/mol
p-value: 0.045756

position:  485
target 5' A     C   A             A 3'
           GACGA GGC AUCUUGUUCUCAG
           UUGUU UUG UAGAGCAGGGGUU
miRNA  3' G                         5'

target: AT2G19130.1
miRNA: ath-miR447b
miRNA: ath-miR447b
mfe: -25.7 kcal/mol
p-value: 0.044119

position:  485
target 5' A     C   A             A 3'
           GACGA GGC AUCUUGUUCUCAG
           UUGUU UUG UAGAGCAGGGGUU
miRNA  3' G                         5'

Ortholog Group

Ortholog Groups: OG5_127930

Accession	Taxon
NP_001031022	Arabidopsis thaliana
NP_001154438	Arabidopsis thaliana
NP_001154439	Arabidopsis thaliana
NP_172597	Arabidopsis thaliana
NP_172600	Arabidopsis thaliana
NP_172601	Arabidopsis thaliana
NP_172602	Arabidopsis thaliana
NP_172608	Arabidopsis thaliana
NP_176331	Arabidopsis thaliana
NP_176332	Arabidopsis thaliana
NP_176334	Arabidopsis thaliana
NP_176335	Arabidopsis thaliana
NP_176337	Arabidopsis thaliana
NP_176338	Arabidopsis thaliana
NP_176339	Arabidopsis thaliana
NP_176341	Arabidopsis thaliana
NP_176343	Arabidopsis thaliana
NP_176344	Arabidopsis thaliana
NP_176349	Arabidopsis thaliana
NP_176355	Arabidopsis thaliana
NP_176755	Arabidopsis thaliana
NP_176756	Arabidopsis thaliana
NP_179503 ( AT2G19130 )	Arabidopsis thaliana
NP_193869	Arabidopsis thaliana
NP_193870	Arabidopsis thaliana
NP_194459	Arabidopsis thaliana
NP_194460	Arabidopsis thaliana
NP_563887	Arabidopsis thaliana
NP_564775	Arabidopsis thaliana
NP_564777	Arabidopsis thaliana
NP_849636	Arabidopsis thaliana
NP_849637	Arabidopsis thaliana
NP_001043431	Oryza sativa Japonica Group
NP_001044457	Oryza sativa Japonica Group
NP_001044460	Oryza sativa Japonica Group
NP_001044463	Oryza sativa Japonica Group
NP_001045048	Oryza sativa Japonica Group
NP_001045050	Oryza sativa Japonica Group
NP_001049414	Oryza sativa Japonica Group
NP_001050479	Oryza sativa Japonica Group
NP_001052000	Oryza sativa Japonica Group
NP_001052001	Oryza sativa Japonica Group
NP_001052282	Oryza sativa Japonica Group
NP_001052543	Oryza sativa Japonica Group
NP_001052777	Oryza sativa Japonica Group
NP_001052778	Oryza sativa Japonica Group
NP_001052781	Oryza sativa Japonica Group
NP_001052783	Oryza sativa Japonica Group
NP_001052784	Oryza sativa Japonica Group
NP_001053984	Oryza sativa Japonica Group
NP_001053986	Oryza sativa Japonica Group
NP_001053989	Oryza sativa Japonica Group
NP_001053990	Oryza sativa Japonica Group
NP_001053991	Oryza sativa Japonica Group
NP_001053994	Oryza sativa Japonica Group
NP_001053995	Oryza sativa Japonica Group
NP_001053996	Oryza sativa Japonica Group
NP_001053997	Oryza sativa Japonica Group
NP_001053998	Oryza sativa Japonica Group
NP_001053999	Oryza sativa Japonica Group
NP_001054747	Oryza sativa Japonica Group
NP_001054749	Oryza sativa Japonica Group
NP_001054750	Oryza sativa Japonica Group
NP_001055970	Oryza sativa Japonica Group
NP_001059070	Oryza sativa Japonica Group
NP_001059941	Oryza sativa Japonica Group
NP_001059942	Oryza sativa Japonica Group
NP_001059949	Oryza sativa Japonica Group
NP_001063864	Oryza sativa Japonica Group
NP_001063868	Oryza sativa Japonica Group
NP_001064385	Oryza sativa Japonica Group
NP_001067472	Oryza sativa Japonica Group
NP_001067473	Oryza sativa Japonica Group
e_gw1.180.26.1	Physcomitrella patens subsp. patens
28229.m000056	Ricinus communis
28515.m000308	Ricinus communis
29615.m000503	Ricinus communis
29733.m000757	Ricinus communis
29747.m001087	Ricinus communis
29747.m001089	Ricinus communis
29784.m000368	Ricinus communis
29842.m003707	Ricinus communis
29842.m003711	Ricinus communis
29842.m003712	Ricinus communis
29842.m003713	Ricinus communis
29842.m003714	Ricinus communis
29933.m001462	Ricinus communis
29933.m001463	Ricinus communis
29933.m001466	Ricinus communis
29983.m003173	Ricinus communis
30014.m000448	Ricinus communis
30014.m000453	Ricinus communis
30014.m000454	Ricinus communis
30014.m000456	Ricinus communis
30027.m000839	Ricinus communis
30071.m000441	Ricinus communis
30071.m000442	Ricinus communis
30128.m008944	Ricinus communis
30138.m004010	Ricinus communis
30138.m004012	Ricinus communis
30225.m001677	Ricinus communis
38590.m000013	Ricinus communis
60621.m000011	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR24420	7.8E-266	1	800	No hit	NA
PIRSF	PIRSF000641	0.0	1	817	IPR024171	S-receptor-like serine/threonine-protein kinase
ProSiteProfiles	PS50927	17.9	23	146	IPR001480	Bulb-type lectin domain
SMART	SM00108	2.0E-45	29	152	IPR001480	Bulb-type lectin domain
Pfam	PF01453	5.5E-35	69	184	IPR001480	Bulb-type lectin domain
SUPERFAMILY	SSF51110	3.1E-25	71	183	IPR001480	Bulb-type lectin domain
Pfam	PF00954	1.2E-34	209	319	IPR000858	S-locus glycoprotein
ProSiteProfiles	PS50948	11.2	341	422	IPR003609	Apple-like
SMART	SM00473	4.8E-16	344	421	IPR003609	Apple-like
SUPERFAMILY	SSF57414	2.5E-10	344	407	No hit	NA
Pfam	PF08276	3.0E-14	345	403	IPR013227	PAN-2 domain
SUPERFAMILY	SSF56112	4.4E-74	479	767	IPR011009	Protein kinase-like domain
ProSiteProfiles	PS50011	35.5	493	770	IPR000719	Protein kinase, catalytic domain
SMART	SM00220	2.1E-26	493	765	IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain
Pfam	PF00069	1.5E-45	496	764	IPR000719	Protein kinase, catalytic domain
ProSitePatterns	PS00107	NA	499	521	IPR017441	Protein kinase, ATP binding site
ProSitePatterns	PS00108	NA	615	627	IPR008271	Serine/threonine-protein kinase, active site

Subcellular Localization

Localization

plasma membrane

Evidence

SUBAcon

Pubmed ID

23180787