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| GenBank ID | AF251068 |
| Alias | OsAkαGal |
| Organism | Rice (Oryza sativa) |
| Taxonomic identifier | [NCBI] |
| Function category | Lipid/Carbohydrate metabolism:degradation of digalactosyl diacylglycerol |
| Effect for Senescence | promote |
| Gene Description | OsAkαGal (chloroplast alkaline α-galactosidase) null mutant (osakαgal) shows delayed leaf senescence.OsAkαGal is a thylakoid membrane-degrading enzyme involved in the degradation of digalactosyl diacylglycerol during rice leaf senescence. |
| Evidence | Genetic evidence:Mutant [Ref 1] |
| References | 1: Lee RH, Hsu JH, Huang HJ, Lo SF, Chen SCAlkaline alpha-galactosidase degrades thylakoid membranes in the chloroplast during leaf senescence in rice.New Phytol. 2009 Nov;184(3):596-6062: Lee RH, Wang CH, Huang LT, Chen SCLeaf senescence in rice plants: cloning and characterization of senescence up-regulated genes.J. Exp. Bot. 2001 May;52(358):1117-213: Lee RH, Lin MC, Chen SCA novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.Plant Mol. Biol. 2004 May;55(2):281-95 |
| Sequence | AF251068.2 | mRNA | CDS | Protein
|
|
| Mutated 1 | | Mutant name |
osakalphagal | | Mutant/Transgenic |
mutant | | Ecotype |
Rice (Oryza sativa) |
| Mutagenesis type |
EMS |
|
| Mutated 2 | | Mutant name |
UbiP-OsAkalphaGal | | Mutant/Transgenic |
transgenic | | Ecotype |
Rice (Oryza sativa) |
| Mutagenesis type |
Overexpression |
|
miRNA Interaction  | |
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| Details | | target: AF251068
miRNA: osa-miR1431
miRNA: osa-miR1431
mfe: -28.8 kcal/mol
p-value: 0.124724
position: 10
target 5' A A 3'
CGAG GGGCUAAU CGCAAA
GUUC CCCGGUUG GCGUUU
miRNA 3' C G A 5'
target: AF251068
miRNA: osa-miR166a
miRNA: osa-miR166a
mfe: -33.0 kcal/mol
p-value: 0.009894
position: 1136
target 5' G U A G U 3'
GG GGAGU AGGCCUGGU CUGA
CC CCUUA UUCGGACCA GGCU
miRNA 3' C 5'
target: AF251068
miRNA: osa-miR166b
miRNA: osa-miR166b
mfe: -33.0 kcal/mol
p-value: 0.011074
position: 1136
target 5' G U A G U 3'
GG GGAGU AGGCCUGGU CUGA
CC CCUUA UUCGGACCA GGCU
miRNA 3' C 5'
target: AF251068
miRNA: osa-miR166c
miRNA: osa-miR166c
mfe: -33.0 kcal/mol
p-value: 0.009670
position: 1136
target 5' G U A G U 3'
GG GGAGU AGGCCUGGU CUGA
CC CCUUA UUCGGACCA GGCU
miRNA 3' C 5'
target: AF251068
miRNA: osa-miR166d
miRNA: osa-miR166d
mfe: -33.0 kcal/mol
p-value: 0.010037
position: 1136
target 5' G U A G U 3'
GG GGAGU AGGCCUGGU CUGA
CC CCUUA UUCGGACCA GGCU
miRNA 3' C 5'
target: AF251068
miRNA: osa-miR166f
miRNA: osa-miR166f
mfe: -33.0 kcal/mol
p-value: 0.010601
position: 1136
target 5' G U A G U 3'
GG GGAGU AGGCCUGGU CUGA
CC CCUUA UUCGGACCA GGCU
miRNA 3' C 5'
target: AF251068
miRNA: osa-miR166k
miRNA: osa-miR166k
mfe: -28.5 kcal/mol
p-value: 0.035068
position: 1136
target 5' G U G A G U 3'
GG GGA U AGGCCUGGU CUGA
UC CCU A UUCGGACCA GGCU
miRNA 3' A C 5'
target: AF251068
miRNA: osa-miR166l
miRNA: osa-miR166l
mfe: -28.5 kcal/mol
p-value: 0.037486
position: 1136
target 5' G U G A G U 3'
GG GGA U AGGCCUGGU CUGA
UC CCU A UUCGGACCA GGCU
miRNA 3' A C 5'
target: AF251068
miRNA: osa-miR166m
miRNA: osa-miR166m
mfe: -32.2 kcal/mol
p-value: 0.013386
position: 1136
target 5' G U A G U 3'
GG GGAGU AGGCCUGGU CUGA
UC CCUUA UUCGGACCA GGCU
miRNA 3' C 5'
target: AF251068
miRNA: osa-miR166n
miRNA: osa-miR166n
mfe: -33.0 kcal/mol
p-value: 0.010356
position: 1136
target 5' G U A G U 3'
GG GGAGU AGGCCUGGU CUGA
CC CCUUA UUCGGACCA GGCU
miRNA 3' C 5'
target: AF251068
miRNA: osa-miR171a
miRNA: osa-miR171a
mfe: -31.1 kcal/mol
p-value: 0.021739
position: 2360
target 5' C A A C 3'
GAUG UGG UGCGGCUUGGUCA
CUAU ACC GCGCCGAGUUAGU
miRNA 3' A 5'
target: AF251068
miRNA: osa-miR171b
miRNA: osa-miR171b
mfe: -28.5 kcal/mol
p-value: 0.042846
position: 2360
target 5' C A A C 3'
GAUG UGG UGCGGCUUGGUCA
CUAU ACC GUGCCGAGUUAGU
miRNA 3' A 5'
target: AF251068
miRNA: osa-miR171c
miRNA: osa-miR171c
mfe: -28.5 kcal/mol
p-value: 0.048194
position: 2360
target 5' C A A C 3'
GAUG UGG UGCGGCUUGGUCA
CUAU ACC GUGCCGAGUUAGU
miRNA 3' A 5'
target: AF251068
miRNA: osa-miR171d
miRNA: osa-miR171d
mfe: -28.5 kcal/mol
p-value: 0.042216
position: 2360
target 5' C A A C 3'
GAUG UGG UGCGGCUUGGUCA
CUAU ACC GUGCCGAGUUAGU
miRNA 3' A 5'
target: AF251068
miRNA: osa-miR171e
miRNA: osa-miR171e
mfe: -28.5 kcal/mol
p-value: 0.048736
position: 2360
target 5' C A A C 3'
GAUG UGG UGCGGCUUGGUCA
CUAU ACC GUGCCGAGUUAGU
miRNA 3' A 5'
target: AF251068
miRNA: osa-miR171f
miRNA: osa-miR171f
mfe: -28.5 kcal/mol
p-value: 0.047371
position: 2360
target 5' C A A C 3'
GAUG UGG UGCGGCUUGGUCA
CUAU ACC GUGCCGAGUUAGU
miRNA 3' A 5'
target: AF251068
miRNA: osa-miR1884b
miRNA: osa-miR1884b
mfe: -26.2 kcal/mol
p-value: 0.048107
position: 1972
target 5' C C C C G 3'
GA GGUCA CGGUGUCAU CGU
UU UCAGU GUCGCAGUA GUA
miRNA 3' A U U U A 5'
target: AF251068
miRNA: osa-miR2094-3p
miRNA: osa-miR2094-3p
mfe: -33.5 kcal/mol
p-value: 0.016421
position: 226
target 5' U C C G A 3'
GGCG UGGG GCCACGGU CUG
CUGC ACCU CGGUGUCG GAC
miRNA 3' G A A 5'
target: AF251068
miRNA: osa-miR2095-3p
miRNA: osa-miR2095-3p
mfe: -18.8 kcal/mol
p-value: 0.143016
position: 1380
target 5' G G C A 3'
GUGCU G CAUGG UGGAAG
UAUGA U GUAUU ACCUUC
miRNA 3' A A U 5'
target: AF251068
miRNA: osa-miR2871a
miRNA: osa-miR2871a
mfe: -22.5 kcal/mol
p-value: 0.117816
position: 183
target 5' A G C G 3'
UGAC GUGGGAGC GGGGUG
ACUG UAUCUUUG UUUUAU
miRNA 3' C G A 5'
target: AF251068
miRNA: osa-miR2871b
miRNA: osa-miR2871b
mfe: -22.5 kcal/mol
p-value: 0.107244
position: 183
target 5' A G C G 3'
UGAC GUGGGAGC GGGGUG
ACUG UAUCUUUG UUUUAU
miRNA 3' C G A 5'
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