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| Locus name | AT5G05110 |
| Organism | Arabidopsis thaliana | | Taxonomic identifier | [NCBI] | | Function category | Protein degradation/modification | | Effect for Senescence | unclear | | Gene Description | cysteine protease inhibitor, putative / cystatin, putative similar to cysteine proteinase inhibitor [Glycine max] GI:1944342; contains Pfam profile PF00031: Cystatin domain | | Evidence | Genomic evidence:microarray data [Ref 1] | | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 | | Gene Ontology | | | Sequence | AT5G05110.1 | Genomic | mRNA | CDS | Protein
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| | Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) | | Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
| | Details | | target: AT5G05110.1
miRNA: ath-miR853
miRNA: ath-miR853
mfe: -30.2 kcal/mol
p-value: 0.002815
position: 717
target 5' A G G G C 3'
CU CU CU AAGCUAGAGAGGGG
GA GA GG UUCGAUUUCUCCCC
miRNA 3' A U 5'
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| Cross Link | |
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| | Localization | extracellular | | Evidence | SUBAcon | | Pubmed ID | 23180787 |
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