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| Locus name | AT5G50260 |
| Organism | Arabidopsis thaliana | | Taxonomic identifier | [NCBI] | | Function category | Protein degradation/modification | | Effect for Senescence | unclear | | Gene Description | cysteine proteinase, putative similar to cysteine endopeptidase precursor CysEP GI:2944446 from [Ricinus communis] | | Evidence | Genomic evidence:microarray data [Ref 1] | | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 | | Gene Ontology | | | Sequence | AT5G50260.1 | Genomic | mRNA | CDS | Protein
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| | Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) | | Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
Ortholog Group  | |
| | Ortholog Groups: OG5_126607 | |
| Cross Link | |
| | Database | Entry ID | E-value | Start | End | InterPro ID | Description | | PANTHER | PTHR12411 | 9.8E-183 | 1 | 350 | IPR013128 | Peptidase C1A, papain | | SUPERFAMILY | SSF54001 | 6.8E-110 | 31 | 342 | No hit | NA | | Pfam | PF08246 | 7.1E-14 | 38 | 93 | IPR013201 | Proteinase inhibitor I29, cathepsin propeptide | | SMART | SM00848 | 6.1E-18 | 38 | 93 | IPR013201 | Proteinase inhibitor I29, cathepsin propeptide | | Pfam | PF00112 | 4.0E-85 | 126 | 341 | IPR000668 | Peptidase C1A, papain C-terminal | | SMART | SM00645 | 4.5E-127 | 126 | 342 | IPR000668 | Peptidase C1A, papain C-terminal | | PRINTS | PR00705 | 1.5E-10 | 144 | 159 | IPR000668 | Peptidase C1A, papain C-terminal | | ProSitePatterns | PS00139 | NA | 144 | 155 | IPR000169 | Cysteine peptidase, cysteine active site | | ProSitePatterns | PS00639 | NA | 284 | 294 | IPR025660 | Cysteine peptidase, histidine active site | | PRINTS | PR00705 | 1.5E-10 | 286 | 296 | IPR000668 | Peptidase C1A, papain C-terminal | | PRINTS | PR00705 | 1.5E-10 | 302 | 308 | IPR000668 | Peptidase C1A, papain C-terminal | | ProSitePatterns | PS00640 | NA | 302 | 321 | IPR025661 | Cysteine peptidase, asparagine active site |
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