Basic information
Locus name	AT4G16640
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification
Effect for Senescence	unclear
Gene Description	matrix metalloproteinase, putative metalloproteinase [Arabidopsis thaliana] GI:3128477; contains InterPro accession IPR001818: Matrixin
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process proteolysis cellular component extracellular matrix molecular function metalloendopeptidase activity zinc ion binding
Sequence	AT4G16640.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_134981	Accession Taxon NP_176205 Arabidopsis thaliana NP_193397 ( AT4G16640 ) Arabidopsis thaliana gw1.184.91.1 Physcomitrella patens subsp. patens 29736.m002110 Ricinus communis 29822.m003413 Ricinus communis 29822.m003414 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10201 5.3E-126 43 322 No hit NA SUPERFAMILY SSF47090 3.1E-17 61 135 IPR002477 Peptidoglycan binding-like Pfam PF01471 1.4E-11 69 125 IPR002477 Peptidoglycan binding-like PRINTS PR00138 1.0E-36 125 138 IPR021190 Peptidase M10A SUPERFAMILY SSF55486 1.7E-43 152 324 No hit NA SMART SM00235 5.4E-51 155 320 IPR006026 Peptidase, metallopeptidase Pfam PF00413 9.0E-50 158 319 IPR001818 Peptidase M10, metallopeptidase PRINTS PR00138 1.0E-36 186 201 IPR021190 Peptidase M10A PRINTS PR00138 1.0E-36 210 238 IPR021190 Peptidase M10A PRINTS PR00138 1.0E-36 272 297 IPR021190 Peptidase M10A PRINTS PR00138 1.0E-36 306 319 IPR021190 Peptidase M10A