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| Locus name | AT5G04250 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification |
| Effect for Senescence | unclear |
| Gene Description | OTU-like cysteine protease family protein contains Pfam profile PF02338: OTU-like cysteine protease |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Sequence | AT5G04250.1 | Genomic | mRNA | CDS | Protein
AT5G04250.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G04250.1
miRNA: ath-miR172b
miRNA: ath-miR172b
mfe: -25.2 kcal/mol
p-value: 0.004488
position: 316
target 5' A G G 3'
UGAGUC UGGUGGUG UG
ACUUAG AUUACCAC AC
miRNA 3' C A G G 5'
target: AT5G04250.1
miRNA: ath-miR773
miRNA: ath-miR773
mfe: -26.3 kcal/mol
p-value: 0.014480
position: 690
target 5' U U G C 3'
GG CAGAGGUUGG AAGCGA
UC GUUUUCGACC UUCGUU
miRNA 3' C U U 5'
target: AT5G04250.2
miRNA: ath-miR172b
miRNA: ath-miR172b
mfe: -25.2 kcal/mol
p-value: 0.004744
position: 389
target 5' A G G 3'
UGAGUC UGGUGGUG UG
ACUUAG AUUACCAC AC
miRNA 3' C A G G 5'
target: AT5G04250.2
miRNA: ath-miR773
miRNA: ath-miR773
mfe: -26.3 kcal/mol
p-value: 0.015335
position: 763
target 5' U U G C 3'
GG CAGAGGUUGG AAGCGA
UC GUUUUCGACC UUCGUU
miRNA 3' C U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_163650 | |
| Cross Link | |
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