Basic information   
Locus name AT5G23020
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryNutrient recycling
Effect for Senescenceunclear
Gene Description2-isopropylmalate synthase 2 (IMS2) identical to 2-isopropylmalate synthase (IMS2) [Arabidopsis thaliana] GI:12330689
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
biological process
molecular function
Pathway
KEGG
SequenceAT5G23020.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_128072
AccessionTaxon
NP_173285Arabidopsis thaliana
NP_177544Arabidopsis thaliana
NP_197692Arabidopsis thaliana
NP_197693 ( AT5G23020 ) Arabidopsis thaliana
CMQ337CCyanidioschyzon merolae strain 10D
196609Chlamydomonas reinhardtii
ACO69978Micromonas sp. RCC299
NP_001065720Oryza sativa Japonica Group
NP_001066116Oryza sativa Japonica Group
e_gw1.01.00.160.1Ostreococcus tauri
e_gw1.188.60.1Physcomitrella patens subsp. patens
e_gw1.47.59.1Physcomitrella patens subsp. patens
30041.m000240Ricinus communis
gw1.1.130.1Thalassiosira pseudonana CCMP1335
XP_002945733Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR102779.0E-20868483No hitNA
SUPERFAMILYSSF515695.3E-9081383No hitNA
ProSiteProfilesPS5099141.985359IPR000891Pyruvate carboxyltransferase
ProSitePatternsPS00815NA92108IPR002034Alpha-isopropylmalate/homocitrate synthase, conserved site
PfamPF006821.4E-7393341IPR000891Pyruvate carboxyltransferase
ProSitePatternsPS00816NA289302IPR002034Alpha-isopropylmalate/homocitrate synthase, conserved site
Subcellular Localization   
Localizationplastid
EvidenceSUBAcon
Pubmed ID23180787