Leaf Senescence DataBase

Basic information

Locus name

AT1G08630

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Nutrient recycling

Effect for Senescence

unclear

Gene Description

L-allo-threonine aldolase-related similar to L-allo-threonine aldolase (EC 4.1.2.-) (L-allo-TA) (L-allo-threonine acetaldehyde-lyase) (SP:O07051) {Aeromonas jandaei}; similar to ESTs gb|R30517, gb|T42772, gb|R90493, and gb|R90493

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	cellular amino acid metabolic process
molecular function	lyase activity

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT1G08630.1
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -25.2 kcal/mol
p-value: 0.019899

position:  789
target 5' G       U             U 3'
           GAG AGA UGCGAAGAGA CA
           UUC UCU AUGCUUCUCU GU
miRNA  3' G   U   C          A    5'

target: AT1G08630.2
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -25.2 kcal/mol
p-value: 0.018229

position:  656
target 5' G       U             U 3'
           GAG AGA UGCGAAGAGA CA
           UUC UCU AUGCUUCUCU GU
miRNA  3' G   U   C          A    5'

target: AT1G08630.3
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -25.2 kcal/mol
p-value: 0.018077

position:  644
target 5' G       U             U 3'
           GAG AGA UGCGAAGAGA CA
           UUC UCU AUGCUUCUCU GU
miRNA  3' G   U   C          A    5'

target: AT1G08630.4
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -25.2 kcal/mol
p-value: 0.017720

position:  616
target 5' G       U             U 3'
           GAG AGA UGCGAAGAGA CA
           UUC UCU AUGCUUCUCU GU
miRNA  3' G   U   C          A    5'

target: AT1G08630.5
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -25.2 kcal/mol
p-value: 0.017695

position:  656
target 5' G       U             U 3'
           GAG AGA UGCGAAGAGA CA
           UUC UCU AUGCUUCUCU GU
miRNA  3' G   U   C          A    5'

Ortholog Group

Ortholog Groups: OG5_128639

Accession	Taxon
NP_001031001 ( AT1G08630 )	Arabidopsis thaliana
NP_001077492	Arabidopsis thaliana
NP_563822	Arabidopsis thaliana
NP_566228	Arabidopsis thaliana
NP_849614	Arabidopsis thaliana
NP_849615	Arabidopsis thaliana
141056	Chlamydomonas reinhardtii
ACO69328	Micromonas sp. RCC299
NP_001053314	Oryza sativa Japonica Group
e_gw1.08.00.236.1	Ostreococcus tauri
estExt_gwp_gw1.C_1020011	Physcomitrella patens subsp. patens
29680.m001689	Ricinus communis
e_gw1.3.383.1	Thalassiosira pseudonana CCMP1335
estExt_fgenesh1_pg.C_chr_30089	Thalassiosira pseudonana CCMP1335
XP_002953274	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR10289	3.9E-145	1	340	No hit	NA
PIRSF	PIRSF017617	4.4E-167	1	343	IPR023603	Threonine aldolase
SUPERFAMILY	SSF53383	1.5E-106	6	334	IPR015424	Pyridoxal phosphate-dependent transferase
Pfam	PF01212	5.4E-90	7	272	IPR001597	Aromatic amino acid beta-eliminating lyase/threonine aldolase