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Locus name | AT5G46180 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Nutrient recycling |
Effect for Senescence | unclear |
Gene Description | ornithine aminotransferase, putative / ornithine--oxo-acid aminotransferase, putative similar to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13) (Ornithine--oxo-acid aminotransferase) [Aspergillus nidulans] {Emericella nidulans}; contains Pfam profile PF00202: aminotransferase, class III |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Pathway | |
Sequence | AT5G46180.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT5G46180.1 miRNA: ath-miR781 miRNA: ath-miR781 mfe: -21.1 kcal/mol p-value: 0.156019
position: 849 target 5' A C C 3' AAG UGU UAGAGAACUCUG UUC AUA GUCUUUUGAGAU miRNA 3' A G U 5'
target: AT5G46180.1 miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -23.0 kcal/mol p-value: 0.063667
position: 552 target 5' U U A G 3' UGAAAC AGCAAGAAA UGG ACUUUG UUGUUCUUU ACU miRNA 3' C G A 5'
target: AT5G46180.1 miRNA: ath-miR844 miRNA: ath-miR844 mfe: -22.7 kcal/mol p-value: 0.021293
position: 173 target 5' G C 3' AGC UAU GGCGGUCU GCCA UCG AUA UCGUUAGA UGGU miRNA 3' A U A 5'
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Ortholog Group | |
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Ortholog Groups: OG5_126982 | |
Cross Link | |
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Localization | mitochondrion |
Evidence | SUBAcon |
Pubmed ID | 23180787 |