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| Locus name | AT3G59580 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Nutrient recycling |
| Effect for Senescence | unclear |
| Gene Description | RWP-RK domain-containing protein similar to nodule inception protein [Lotus japonicus] GI:6448579; contains Pfam profile: PF02042 RWP-RK domain |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT3G59580.1 | Genomic | mRNA | CDS | Protein
AT3G59580.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT3G59580.1
miRNA: ath-miR844
miRNA: ath-miR844
mfe: -24.6 kcal/mol
p-value: 0.011665
position: 2425
target 5' U C G G 3'
AGCU A GAGCAGUUUUGCU
UCGA U UUCGUUAGAAUGG
miRNA 3' A A U 5'
target: AT3G59580.2
miRNA: ath-miR844
miRNA: ath-miR844
mfe: -24.6 kcal/mol
p-value: 0.011874
position: 2435
target 5' U C G G 3'
AGCU A GAGCAGUUUUGCU
UCGA U UUCGUUAGAAUGG
miRNA 3' A A U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_164232 | |
| Cross Link | |
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