Basic information
Locus name	AT4G27780
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	acyl-CoA binding protein 2 (ACBP2) identical to acyl-CoA binding protein 2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function fatty-acyl-CoA binding
Sequence	AT4G27780.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_130105	Accession Taxon NP_194507 ( AT4G27780 ) Arabidopsis thaliana NP_200159 Arabidopsis thaliana ACO64254 Micromonas sp. RCC299 NP_001054292 Oryza sativa Japonica Group gw1.13.00.309.1 Ostreococcus tauri e_gw1.22.72.1 Physcomitrella patens subsp. patens e_gw1.326.14.1 Physcomitrella patens subsp. patens e_gw1.81.54.1 Physcomitrella patens subsp. patens 29753.m000252 Ricinus communis thaps1_ua_kg.chr_22000115 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23310 1.9E-36 89 230 No hit NA SUPERFAMILY SSF47027 3.3E-26 103 193 IPR000582 Acyl-CoA-binding protein, ACBP Pfam PF00887 7.9E-25 104 191 IPR000582 Acyl-CoA-binding protein, ACBP ProSiteProfiles PS51228 38.0 104 194 IPR000582 Acyl-CoA-binding protein, ACBP PRINTS PR00689 3.8E-7 127 145 IPR000582 Acyl-CoA-binding protein, ACBP PRINTS PR00689 3.8E-7 150 165 IPR000582 Acyl-CoA-binding protein, ACBP PRINTS PR00689 3.8E-7 171 188 IPR000582 Acyl-CoA-binding protein, ACBP SUPERFAMILY SSF48403 3.1E-30 233 339 IPR020683 Ankyrin repeat-containing domain ProSiteProfiles PS50297 31.9 236 338 IPR020683 Ankyrin repeat-containing domain Pfam PF12796 2.5E-19 238 329 IPR020683 Ankyrin repeat-containing domain ProSiteProfiles PS50088 15.7 265 297 IPR002110 Ankyrin repeat SMART SM00248 4.5E-8 265 294 IPR002110 Ankyrin repeat PRINTS PR01415 8.2E-5 266 281 IPR002110 Ankyrin repeat ProSiteProfiles PS50088 11.8 298 330 IPR002110 Ankyrin repeat SMART SM00248 0.0 298 327 IPR002110 Ankyrin repeat PRINTS PR01415 8.2E-5 314 328 IPR002110 Ankyrin repeat
Subcellular Localization
Localization 1 Localization ER Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization plasma membrane Evidence SUBAcon Pubmed ID 23180787