Basic information
Locus name	AT3G23790
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	AMP-binding protein, putative similar to AMP-binding protein GB:CAA96521 from [Brassica napus] (Plant Mol. Biol. (1997) 33 (5), 911-922); contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA acyl-CoA synthetase-like protein GI:20799732
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process metabolic process molecular function catalytic activity
Sequence	AT3G23790.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_140059	Accession Taxon NP_189021 ( AT3G23790 ) Arabidopsis thaliana NP_193143 Arabidopsis thaliana CMT459C Cyanidioschyzon merolae strain 10D 188925 Chlamydomonas reinhardtii NP_001051878 Oryza sativa Japonica Group e_gw1.172.9.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2220037 Physcomitrella patens subsp. patens 30157.m000795 Ricinus communis 30157.m000798 Ricinus communis thaps1_ua_kg.chr_6000249 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_7000062 Thalassiosira pseudonana CCMP1335 XP_002949145 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24096 0.0 27 722 No hit NA SUPERFAMILY SSF56801 2.2E-107 78 369 No hit NA Pfam PF00501 2.6E-100 112 620 IPR000873 AMP-dependent synthetase/ligase PRINTS PR00154 7.2E-5 263 274 IPR020459 AMP-binding ProSitePatterns PS00455 NA 268 279 IPR020845 AMP-binding, conserved site PRINTS PR00154 7.2E-5 275 283 IPR020459 AMP-binding SUPERFAMILY SSF56801 2.2E-107 443 721 No hit NA
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787