Basic information
Locus name	AT3G62580
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	lipase class 3 family protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Sequence	AT3G62580.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G62580.1  miRNA: ath-miR2933a miRNA: ath-miR2933a mfe: -26.1 kcal/mol  p-value: 0.006223  position:  386  target 5' U   C      A       C    G 3'             GCG AAUUUC CUCUCUG UUUU              CGC UUAAAG GAGAGGC AAAG   miRNA  3' C                  U      5'  target: AT3G62580.1  miRNA: ath-miR2933b miRNA: ath-miR2933b mfe: -26.1 kcal/mol  p-value: 0.008689  position:  386  target 5' U   C      A       C    G 3'             GCG AAUUUC CUCUCUG UUUU              CGC UUAAAG GAGAGGC AAAG   miRNA  3' C                  U      5'
Ortholog Group
Ortholog Groups: OG5_130103	Accession Taxon NP_567130 ( AT3G62580 ) Arabidopsis thaliana 176615 Chlamydomonas reinhardtii NP_001067006 Oryza sativa Japonica Group NP_001068440 Oryza sativa Japonica Group estExt_Genewise1.C_1920007 Physcomitrella patens subsp. patens 30076.m004678 Ricinus communis e_gw1.2.714.1 Thalassiosira pseudonana CCMP1335 XP_002954937 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23241 4.1E-30 42 213 No hit NA Pfam PF13664 5.9E-27 47 148 IPR025423 Domain of unknown function DUF4149
Subcellular Localization
Localization	endoplasmic reticulum
Evidence	SUBAcon
Pubmed ID	23180787