Basic information
Locus name	AT1G08940
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	phosphoglycerate/bisphosphoglycerate mutase family protein contains Pfam profile PF00300: phosphoglycerate mutase family
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85 2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process metabolic process molecular function catalytic activity
Pathway	KEGG map00010 (EC 5.4.2.1) map00680 (EC 5.4.2.1) MetaCyc PWY-2221
Sequence	AT1G08940.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_131274	Accession Taxon NP_172369 ( AT1G08940 ) Arabidopsis thaliana NP_187168 Arabidopsis thaliana 123133 Chlamydomonas reinhardtii ACO60650 Micromonas sp. RCC299 ACO61276 Micromonas sp. RCC299 NP_001054606 Oryza sativa Japonica Group NP_001056573 Oryza sativa Japonica Group gw1.03.00.376.1 Ostreococcus tauri e_gw1.14.330.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_280192 Physcomitrella patens subsp. patens gw1.243.35.1 Physcomitrella patens subsp. patens 30128.m008723 Ricinus communis 30190.m011256 Ricinus communis fgenesh1_pg.C_chr_19a_19000090 Thalassiosira pseudonana CCMP1335 gw1.14.167.1 Thalassiosira pseudonana CCMP1335 gw1.8.201.1 Thalassiosira pseudonana CCMP1335 XP_002946902 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23029 1.5E-48 7 272 No hit NA SUPERFAMILY SSF53254 1.2E-36 9 222 No hit NA Pfam PF00300 1.8E-31 11 189 IPR013078 Histidine phosphatase superfamily, clade-1 SMART SM00855 1.5E-19 11 189 IPR013078 Histidine phosphatase superfamily, clade-1 ProSitePatterns PS00175 NA 14 23 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site