Basic information
Locus name	AT3G05630
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	phospholipase D, putative (PLDP2) identical to SP|Q9M9W8 Phospholipase D p2 (EC 3.1.4.4) (AtPLDp2) (Phospholipase D2 PHOX and PX containing domain) (Phospholipase D zeta 2) (PLDzeta2) {Arabidopsis thaliana}; similar to phospholipase D GB:BAA24577 from [Rattus norvegicus]; contains Pfam profile: PF00614 phospholipase D, PF00169 PH domain, PF00787 PX domain
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process metabolic process molecular function catalytic activity phospholipid binding protein binding
Pathway	KEGG map00564 (EC 3.1.4.4) map00565 (EC 3.1.4.4) MetaCyc PWY-3561
Sequence	AT3G05630.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_128363	Accession Taxon NP_187214 ( AT3G05630 ) Arabidopsis thaliana NP_188302 Arabidopsis thaliana NP_001042854 Oryza sativa Japonica Group NP_001055304 Oryza sativa Japonica Group estExt_gwp_gw1.C_1070045 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_462000005 Physcomitrella patens subsp. patens 29726.m004097 Ricinus communis 30128.m008869 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF009376 0.0 1 1046 IPR016555 Phospholipase D, eukaryota PANTHER PTHR18896 0.0 38 1046 IPR015679 Phospholipase D family ProSiteProfiles PS50003 8.0 215 343 IPR001849 Pleckstrin homology domain SMART SM00233 9.3E-5 216 345 IPR001849 Pleckstrin homology domain SUPERFAMILY SSF50729 5.0E-8 217 341 No hit NA Pfam PF00169 5.6E-6 218 340 IPR001849 Pleckstrin homology domain SUPERFAMILY SSF56024 1.4E-39 342 503 No hit NA Pfam PF00614 3.1E-9 472 499 IPR001736 Phospholipase D/Transphosphatidylase ProSiteProfiles PS50035 11.5 472 499 IPR001736 Phospholipase D/Transphosphatidylase SMART SM00155 1.2E-4 472 499 IPR001736 Phospholipase D/Transphosphatidylase SUPERFAMILY SSF56024 1.4E-39 546 592 No hit NA SUPERFAMILY SSF56024 2.2E-29 679 895 No hit NA Pfam PF13091 1.0E-10 721 894 IPR025202 Phospholipase D-like domain ProSiteProfiles PS50035 15.2 847 874 IPR001736 Phospholipase D/Transphosphatidylase SMART SM00155 7.6E-8 847 874 IPR001736 Phospholipase D/Transphosphatidylase
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787