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Locus name | AT4G25000 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Lipid/Carbohydrate metabolism | Effect for Senescence | unclear | Gene Description | alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative similar to alpha-amylase from Vigna mungo SP|P17859, Ipomoea nil GI:21670851; contains Pfam profile PF00128: Alpha amylase, catalytic domain | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 | Gene Ontology | | Pathway | | Sequence | AT4G25000.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
Ortholog Group | |
| Ortholog Groups: OG5_132033 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PIRSF | PIRSF001028 | 0.0 | 1 | 423 | IPR013775 | Alpha-amylase, plant | PANTHER | PTHR10357 | 8.5E-147 | 16 | 422 | IPR015902 | Glycoside hydrolase, family 13 | SMART | SM00642 | 1.4E-52 | 26 | 361 | IPR006589 | Glycosyl hydrolase, family 13, subfamily, catalytic domain | SUPERFAMILY | SSF51445 | 10.0E-71 | 28 | 361 | IPR017853 | Glycoside hydrolase, superfamily | Pfam | PF00128 | 8.3E-24 | 47 | 342 | IPR006047 | Glycosyl hydrolase, family 13, catalytic domain | PRINTS | PR00110 | 3.6E-5 | 106 | 117 | IPR006046 | Alpha amylase | PRINTS | PR00110 | 3.6E-5 | 197 | 208 | IPR006046 | Alpha amylase | PRINTS | PR00110 | 3.6E-5 | 302 | 314 | IPR006046 | Alpha amylase | Pfam | PF07821 | 1.2E-21 | 362 | 422 | IPR012850 | Alpha-amylase, C-terminal beta-sheet | SMART | SM00810 | 6.2E-35 | 362 | 422 | IPR012850 | Alpha-amylase, C-terminal beta-sheet | SUPERFAMILY | SSF51011 | 5.8E-18 | 366 | 422 | No hit | NA |
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| Localization | extracellular | Evidence | SUBAcon | Pubmed ID | 23180787 |
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