Basic information
Locus name	AT4G34160
Alias	CYCD3-1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:Cell cycle regulation
Effect for Senescence	promote
Gene Description	encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation.
Evidence	Genetic evidence:Transgene [Ref 1]
References	1: Menges M, Samland AK, Planchais S, Murray JA The D-type cyclin CYCD3;1 is limiting for the G1-to-S-phase transition in Arabidopsis. Plant Cell 2006 Apr;18(4):893-906
Gene Ontology	cellular component nucleus
Sequence	AT4G34160.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G34160.1  miRNA: ath-miR418 miRNA: ath-miR418 mfe: -24.9 kcal/mol  p-value: 0.007907  position:  1165  target 5' A    C A          U     A 3'             GUCA G UUCAUCAUCA CGUUG              CAGU C AAGUAGUAGU GUAAU   miRNA  3' C                         5'
Ortholog Group
Ortholog Groups: OG5_170658	Accession Taxon NP_195142 ( AT4G34160 ) Arabidopsis thaliana ACO69727 Micromonas sp. RCC299 NP_001062574 Oryza sativa Japonica Group 29801.m003121 Ricinus communis 30170.m013822 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10177 9.0E-137 6 372 No hit NA SUPERFAMILY SSF47954 1.9E-31 56 187 IPR013763 Cyclin-like Pfam PF00134 3.5E-28 82 186 IPR006671 Cyclin, N-terminal ProSitePatterns PS00292 NA 87 118 IPR006671 Cyclin, N-terminal SMART SM00385 2.0E-14 92 180 IPR013763 Cyclin-like SUPERFAMILY SSF47954 8.1E-5 171 283 IPR013763 Cyclin-like Pfam PF02984 8.2E-12 189 294 IPR004367 Cyclin, C-terminal domain SMART SM00385 3.5 193 281 IPR013763 Cyclin-like
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization nucleus Evidence Localization with GFP-ORF fusion protein (GFP:cDNA) Pubmed ID 15610358
Localization 3 Localization nucleus Evidence SUBAcon Pubmed ID 23180787