Basic information
Locus name	AT1G55850
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	cellulose synthase family protein similar to cellulose synthase from Gossypium hirsutum [gi:1706956], cellulose synthase-5 from Zea mays [gi:9622882]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process cellulose biosynthetic process cellular component membrane molecular function cellulose synthase (UDP-forming) activity
Sequence	AT1G55850.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G55850.1  miRNA: ath-miR156g miRNA: ath-miR156g mfe: -28.8 kcal/mol  p-value: 0.007170  position:  2010  target 5' A      A           U 3'             UGCUCA UCUCUUCUG C              ACGAGU AGAGAAGAC G   miRNA  3' C      G         A C 5'  target: AT1G55850.1  miRNA: ath-miR164c miRNA: ath-miR164c mfe: -29.9 kcal/mol  p-value: 0.015973  position:  1013  target 5' A   G   C       A C    U 3'             CGC ACG GCUCUGC U CUCC              GCG UGC CGGGACG A GAGG   miRNA  3'         A       A      U 5'  target: AT1G55850.1  miRNA: ath-miR853 miRNA: ath-miR853 mfe: -28.8 kcal/mol  p-value: 0.013298  position:  646  target 5' A    G             U  C 3'             UUCU C GGCUGAGGAGG GG              AAGA G UCGAUUUCUCC CC   miRNA  3' G    G U              U 5'
Ortholog Group
Ortholog Groups: OG5_160150	Accession Taxon NP_175981 ( AT1G55850 ) Arabidopsis thaliana NP_001047983 Oryza sativa Japonica Group NP_001063469 Oryza sativa Japonica Group NP_001063470 Oryza sativa Japonica Group 29629.m001409 Ricinus communis 29629.m001410 Ricinus communis 29629.m001411 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32287 0.0 1 725 No hit NA Pfam PF03552 7.7E-88 111 403 IPR005150 Cellulose synthase SUPERFAMILY SSF53448 4.3E-8 126 173 No hit NA SUPERFAMILY SSF53448 4.3E-8 270 391 No hit NA Pfam PF03552 1.8E-50 418 720 IPR005150 Cellulose synthase SUPERFAMILY SSF53448 4.3E-8 420 542 No hit NA
Subcellular Localization
Localization	plasma membrane,endoplasmic reticulum
Evidence	SUBAcon
Pubmed ID	23180787