Basic information   
Locus name AT3G07850
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryLipid/Carbohydrate metabolism
Effect for Senescenceunclear
Gene Descriptionexopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
biological process
molecular function
SequenceAT3G07850.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_141581
AccessionTaxon
NP_187439Arabidopsis thaliana
NP_187440Arabidopsis thaliana
NP_187441Arabidopsis thaliana
NP_187442 ( AT3G07850 ) Arabidopsis thaliana
NP_188020Arabidopsis thaliana
NP_199625Arabidopsis thaliana
NP_001043199Oryza sativa Japonica Group
NP_001046194Oryza sativa Japonica Group
NP_001057814Oryza sativa Japonica Group
NP_001057815Oryza sativa Japonica Group
NP_001057816Oryza sativa Japonica Group
NP_001058061Oryza sativa Japonica Group
29769.m000461Ricinus communis
29769.m00466Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SUPERFAMILYSSF511262.8E-11667437IPR011050Pectin lyase fold/virulence factor
PANTHERPTHR313752.8E-18570443No hitNA
PfamPF002955.6E-10798428IPR000743Glycoside hydrolase, family 28
SMARTSM00710870.0220246IPR006626Parallel beta-helix repeat
SMARTSM007104,100.0247268IPR006626Parallel beta-helix repeat
SMARTSM007104,000.0270290IPR006626Parallel beta-helix repeat
ProSitePatternsPS00502NA277290IPR000743Glycoside hydrolase, family 28
SMARTSM007101.5300321IPR006626Parallel beta-helix repeat
SMARTSM007102,500.0330351IPR006626Parallel beta-helix repeat
Subcellular Localization   
Localizationextracellular
EvidenceSUBAcon
Pubmed ID23180787