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| Locus name | AT2G28110 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Lipid/Carbohydrate metabolism |
| Effect for Senescence | unclear |
| Gene Description | exostosin family protein contains 1 transmembrane domain; similar to pectin-glucuronyltransferase (GI:23821292) [Nicotiana plumbaginifolia]; similar to NpGUT1 homolog (GI:23821294) [Arabidopsis thaliana]; contains Pfam profile PF03016: Exostosin family |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G28110.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT2G28110.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -28.8 kcal/mol
p-value: 0.014580
position: 638
target 5' U G A U 3'
UCUUU UCCCUGUCU UGUC
AGGAG AGGGAUAGG GUAG
miRNA 3' G G A 5'
target: AT2G28110.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -28.9 kcal/mol
p-value: 0.013940
position: 260
target 5' A G C U 3'
UCCUCU UUUUAUCCUCA UC
AGGAGG GGGAUAGGAGU AG
miRNA 3' G A 5'
target: AT2G28110.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -28.8 kcal/mol
p-value: 0.015806
position: 638
target 5' U G A U 3'
UCUUU UCCCUGUCU UGUC
AGGAG AGGGAUAGG GUAG
miRNA 3' G G A 5'
target: AT2G28110.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -28.9 kcal/mol
p-value: 0.015211
position: 260
target 5' A G C U 3'
UCCUCU UUUUAUCCUCA UC
AGGAGG GGGAUAGGAGU AG
miRNA 3' G A 5'
target: AT2G28110.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -28.8 kcal/mol
p-value: 0.014382
position: 638
target 5' U G A U 3'
UCUUU UCCCUGUCU UGUC
AGGAG AGGGAUAGG GUAG
miRNA 3' G G A 5'
target: AT2G28110.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -28.9 kcal/mol
p-value: 0.013767
position: 260
target 5' A G C U 3'
UCCUCU UUUUAUCCUCA UC
AGGAGG GGGAUAGGAGU AG
miRNA 3' G A 5'
target: AT2G28110.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -28.8 kcal/mol
p-value: 0.015540
position: 638
target 5' U G A U 3'
UCUUU UCCCUGUCU UGUC
AGGAG AGGGAUAGG GUAG
miRNA 3' G G A 5'
target: AT2G28110.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -28.9 kcal/mol
p-value: 0.014837
position: 260
target 5' A G C U 3'
UCCUCU UUUUAUCCUCA UC
AGGAGG GGGAUAGGAGU AG
miRNA 3' G A 5'
target: AT2G28110.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -28.8 kcal/mol
p-value: 0.016402
position: 638
target 5' U G A U 3'
UCUUU UCCCUGUCU UGUC
AGGAG AGGGAUAGG GUAG
miRNA 3' G G A 5'
target: AT2G28110.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -28.9 kcal/mol
p-value: 0.015770
position: 260
target 5' A G C U 3'
UCCUCU UUUUAUCCUCA UC
AGGAGG GGGAUAGGAGU AG
miRNA 3' G A 5'
target: AT2G28110.1
miRNA: ath-miR867
miRNA: ath-miR867
mfe: -21.3 kcal/mol
p-value: 0.052494
position: 298
target 5' C U C A G 3'
UUCUU GU GACCAUG UCAA
AAGGA UA UUGGUAC AGUU
miRNA 3' U U A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_160313 | |
| Cross Link | |
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| Localization | golgi |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
