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About
Basic information
Locus name
AT5G42270
Alias
FTSH5
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Chlorophyll degradation
Effect for Senescence
promote
Gene Description
Low expression in cotyledons, increasing with leaves development.Heterohexamers with FTSH1, FTSH2 and FTSH8.
Evidence
Molecular evidence [Ref 1, Ref 2]
References
1: Zaltsman A, Feder A, Adam Z
Developmental and light effects on the accumulation of FtsH protease in Arabidopsis chloroplasts--implications for thylakoid formation and photosystem II maintenance.
Plant J. 2005 Jun;42(5):609-172: Zelisko A, Garcia-Lorenzo M, Jackowski G, Jansson S, Funk C
AtFtsH6 is involved in the degradation of the light-harvesting complex II during high-light acclimation and senescence.
Proc. Natl. Acad. Sci. U.S.A. 2005 Sep 20;102(38):13699-704
Gene Ontology
biological process
protein catabolic process
proteolysis
cellular component
membrane
molecular function
ATP binding
metalloendopeptidase activity
Sequence
AT5G42270.1 |
Genomic
|
mRNA
|
CDS
|
Protein
miRNA Interaction
Details
target: AT5G42270.1
miRNA:
ath-miR834
miRNA:
ath-miR834
mfe: -28.0 kcal/mol
p-value: 0.018634
position: 649
target 5' G U 3'
UGCUACUGUUAUUGUU CC
AUGGUGGCGAUGACGA GG
miRNA 3' A U U 5'
Ortholog Group
Ortholog Groups:
OG5_126616
Accession
Taxon
NP_172231
Arabidopsis thaliana
NP_563766
Arabidopsis thaliana
NP_564563
Arabidopsis thaliana
NP_565616
Arabidopsis thaliana
NP_568311
Arabidopsis thaliana
NP_568604
( AT5G42270 )
Arabidopsis thaliana
NP_568787
Arabidopsis thaliana
NP_850129
Arabidopsis thaliana
NP_850156
Arabidopsis thaliana
CME055C
Cyanidioschyzon merolae strain 10D
CMF159C
Cyanidioschyzon merolae strain 10D
CMI157C
Cyanidioschyzon merolae strain 10D
CMQ295C
Cyanidioschyzon merolae strain 10D
CMV129C
Cyanidioschyzon merolae strain 10D
116904
Chlamydomonas reinhardtii
55270
Chlamydomonas reinhardtii
58334
Chlamydomonas reinhardtii
61144
Chlamydomonas reinhardtii
ACO65058
Micromonas sp. RCC299
ACO66730
Micromonas sp. RCC299
ACO67253
Micromonas sp. RCC299
ACO68844
Micromonas sp. RCC299
ACO69882
Micromonas sp. RCC299
NP_001043384
Oryza sativa Japonica Group
NP_001043385
Oryza sativa Japonica Group
NP_001044774
Oryza sativa Japonica Group
NP_001055745
Oryza sativa Japonica Group
NP_001058321
Oryza sativa Japonica Group
NP_001058625
Oryza sativa Japonica Group
e_gw1.14.00.33.1
Ostreococcus tauri
e_gw1.17.00.77.1
Ostreococcus tauri
estExt_gwp_GeneWisePlus.C_Chr_09.00010447
Ostreococcus tauri
estExt_gwp_GeneWisePlus.C_Chr_10.00010428
Ostreococcus tauri
fgenesh1_pm.C_Chr_01.0001000058
Ostreococcus tauri
e_gw1.118.126.1
Physcomitrella patens subsp. patens
e_gw1.178.57.1
Physcomitrella patens subsp. patens
e_gw1.44.44.1
Physcomitrella patens subsp. patens
e_gw1.9.269.1
Physcomitrella patens subsp. patens
estExt_Genewise1.C_100143
Physcomitrella patens subsp. patens
estExt_Genewise1.C_4560008
Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1560021
Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_3460014
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1800036
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_230101
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_390082
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_90173
Physcomitrella patens subsp. patens
28838.m000257
Ricinus communis
29767.m000207
Ricinus communis
29794.m003305
Ricinus communis
29993.m001041
Ricinus communis
30169.m006526
Ricinus communis
30170.m014336
Ricinus communis
e_gw1.2.77.1
Thalassiosira pseudonana CCMP1335
e_gw1.32x49.1.1
Thalassiosira pseudonana CCMP1335
e_gw1.6.79.1
Thalassiosira pseudonana CCMP1335
estExt_fgenesh1_pm.C_bd_26x410014
Thalassiosira pseudonana CCMP1335
estExt_gwp_gw1.C_chr_70149
Thalassiosira pseudonana CCMP1335
XP_002948337
Volvox carteri f. nagariensis
XP_002949662
Volvox carteri f. nagariensis
XP_002952368
Volvox carteri f. nagariensis
XP_002956225
Volvox carteri f. nagariensis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
Hamap
MF_01458
36.2
7
704
IPR005936
Peptidase, FtsH
PANTHER
PTHR23076
0.0
119
694
No hit
NA
TIGRFAM
TIGR01241
1.3E-218
193
693
IPR005936
Peptidase, FtsH
SUPERFAMILY
SSF52540
3.1E-68
246
490
IPR027417
P-loop containing nucleoside triphosphate hydrolase
SMART
SM00382
2.4E-23
282
421
IPR003593
AAA+ ATPase domain
Pfam
PF00004
2.2E-44
287
418
IPR003959
ATPase, AAA-type, core
ProSitePatterns
PS00674
NA
389
407
IPR003960
ATPase, AAA-type, conserved site
Pfam
PF01434
1.6E-82
480
693
IPR000642
Peptidase M41
SUPERFAMILY
SSF140990
4.6E-67
500
694
No hit
NA
Subcellular Localization
Localization 1
Localization
chloroplast
Evidence
Localization with GFP-fusion protein (GFP:cDNA)
Pubmed ID
10737809
Localization 2
Localization
plastid
Evidence
SUBAcon
Pubmed ID
23180787