Basic information
Locus name	AT4G02280
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative strong similarity to sucrose synthase GI:6682841 from [Citrus unshiu]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process biosynthetic process sucrose metabolic process molecular function sucrose synthase activity
Pathway	KEGG map00500 (EC 2.4.1.13) MetaCyc PWY-621
Sequence	AT4G02280.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G02280.1  miRNA: ath-miR1886 miRNA: ath-miR1886 mfe: -21.6 kcal/mol  p-value: 0.057086  position:  1657  target 5' A      C          A   C 3'             CAA CG AGAUUUCAUC UCA              GUU GU UCUAAAGUAG AGU   miRNA  3' G   A  U                5'  target: AT4G02280.1  miRNA: ath-miR866-5p miRNA: ath-miR866-5p mfe: -24.3 kcal/mol  p-value: 0.016857  position:  1164  target 5' C     C        G C     G 3'             UUGAC AAGUCCGU C CUUGA              AAUUG UUUAGGCA G GAACU   miRNA  3'       U        A         5'
Ortholog Group
Ortholog Groups: OG5_135823	Accession Taxon NP_001031915 Arabidopsis thaliana NP_177480 Arabidopsis thaliana NP_192137 ( AT4G02280 ) Arabidopsis thaliana NP_197583 Arabidopsis thaliana NP_198534 Arabidopsis thaliana NP_199730 Arabidopsis thaliana NP_566865 Arabidopsis thaliana NP_001048620 Oryza sativa Japonica Group NP_001050064 Oryza sativa Japonica Group NP_001050319 Oryza sativa Japonica Group NP_001052309 Oryza sativa Japonica Group NP_001052432 Oryza sativa Japonica Group NP_001057047 Oryza sativa Japonica Group NP_001060278 Oryza sativa Japonica Group e_gw1.28.50.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1200034 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3030025 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_930071 Physcomitrella patens subsp. patens 29660.m000761 Ricinus communis 29726.m004086 Ricinus communis 29739.m003693 Ricinus communis 29951.m000143 Ricinus communis 29986.m001646 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF00862 0.0 7 556 IPR000368 Sucrose synthase TIGRFAM TIGR02470 0.0 24 804 IPR012820 Sucrose synthase, plant/cyanobacteria PANTHER PTHR12526 0.0 134 800 No hit NA Coils Coil NA 203 224 No hit NA SUPERFAMILY SSF53756 8.0E-52 297 765 No hit NA Pfam PF00534 6.8E-28 559 740 IPR001296 Glycosyl transferase, family 1