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Locus name | AT5G25820 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Lipid/Carbohydrate metabolism |
Effect for Senescence | unclear |
Gene Description | exostosin family protein contains Pfam profile: PF03016 exostosin family |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT5G25820.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT5G25820.1 miRNA: ath-miR399a miRNA: ath-miR399a mfe: -26.8 kcal/mol p-value: 0.018577
position: 220 target 5' G C A U 3' AGG GUGAGUCUCC U GGC UCC CGUUUAGAGG A CCG miRNA 3' G A A U 5'
target: AT5G25820.1 miRNA: ath-miR834 miRNA: ath-miR834 mfe: -33.3 kcal/mol p-value: 0.001690
position: 501 target 5' C C 3' UACUACCGCUACU UUACCG AUGGUGGCGAUGA GAUGGU miRNA 3' A C 5'
target: AT5G25820.1 miRNA: ath-miR857 miRNA: ath-miR857 mfe: -22.9 kcal/mol p-value: 0.036274
position: 1091 target 5' A A A 3' AUGCACCU UCGAUG ACAAAG UAUGUGGA AGUUGU UGUUUU miRNA 3' A 5'
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Ortholog Group | |
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Ortholog Groups: OG5_190472 | |
Cross Link | |
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