Basic information
Locus name	AT4G27820
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, hydrolyzing O-glycosyl compounds
Sequence	AT4G27820.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_160151	Accession Taxon NP_176217 Arabidopsis thaliana NP_191833 Arabidopsis thaliana NP_191834 Arabidopsis thaliana NP_193941 Arabidopsis thaliana NP_194511 ( AT4G27820 ) Arabidopsis thaliana NP_567787 Arabidopsis thaliana NP_973974 Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10353 4.7E-272 6 506 IPR001360 Glycoside hydrolase, family 1 SUPERFAMILY SSF51445 7.2E-167 19 482 IPR017853 Glycoside hydrolase, superfamily Pfam PF00232 2.9E-149 25 483 IPR001360 Glycoside hydrolase, family 1 ProSitePatterns PS00653 NA 32 46 IPR018120 Glycoside hydrolase, family 1, active site PRINTS PR00131 4.1E-15 319 333 IPR001360 Glycoside hydrolase, family 1 PRINTS PR00131 4.1E-15 392 400 IPR001360 Glycoside hydrolase, family 1 PRINTS PR00131 4.1E-15 409 420 IPR001360 Glycoside hydrolase, family 1 PRINTS PR00131 4.1E-15 430 447 IPR001360 Glycoside hydrolase, family 1 PRINTS PR00131 4.1E-15 454 466 IPR001360 Glycoside hydrolase, family 1
Subcellular Localization
Localization	vacuole
Evidence	SUBAcon
Pubmed ID	23180787