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Locus name | AT1G02850 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Lipid/Carbohydrate metabolism | Effect for Senescence | unclear | Gene Description | glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max] | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-852: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | Gene Ontology | | Sequence | AT1G02850.1 | Genomic | mRNA | CDS | Protein AT1G02850.2 | Genomic | mRNA | CDS | Protein AT1G02850.3 | Genomic | mRNA | CDS | Protein AT1G02850.4 | Genomic | mRNA | CDS | Protein AT1G02850.5 | Genomic | mRNA | CDS | Protein
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Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
Ortholog Group | |
| Ortholog Groups: OG5_141631 | |
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PANTHER | PTHR10353 | 3.7E-270 | 3 | 487 | IPR001360 | Glycoside hydrolase, family 1 | SUPERFAMILY | SSF51445 | 1.7E-167 | 18 | 486 | IPR017853 | Glycoside hydrolase, superfamily | Pfam | PF00232 | 2.4E-150 | 28 | 486 | IPR001360 | Glycoside hydrolase, family 1 | ProSitePatterns | PS00653 | NA | 35 | 49 | IPR018120 | Glycoside hydrolase, family 1, active site | PRINTS | PR00131 | 1.1E-14 | 324 | 338 | IPR001360 | Glycoside hydrolase, family 1 | PRINTS | PR00131 | 1.1E-14 | 395 | 403 | IPR001360 | Glycoside hydrolase, family 1 | PRINTS | PR00131 | 1.1E-14 | 412 | 423 | IPR001360 | Glycoside hydrolase, family 1 | PRINTS | PR00131 | 1.1E-14 | 433 | 450 | IPR001360 | Glycoside hydrolase, family 1 | PRINTS | PR00131 | 1.1E-14 | 457 | 469 | IPR001360 | Glycoside hydrolase, family 1 |
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