Basic information
Locus name	AT3G04010
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	glycosyl hydrolase family 17 protein similar to beta-1,3-glucanase GB:S12402 [Nicotiana sp], GB:CAA03908 [Citrus sinensis], GB:S44364 [Lycopersicon esculentum]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, hydrolyzing O-glycosyl compounds
Pathway	KEGG map00500 (EC 3.2.1.39)
Sequence	AT3G04010.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G04010.1  miRNA: ath-miR407 miRNA: ath-miR407 mfe: -21.2 kcal/mol  p-value: 0.011336  position:  1333  target 5' A     U              U 3'             ACCAG GGUGUAUG UUUAA              UGGUU UCAUAUAC AAAUU   miRNA  3'       U        U     U 5'  target: AT3G04010.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -25.6 kcal/mol  p-value: 0.006570  position:  359  target 5' C  A  C             C 3'             GA GA GGUGGUGGAGAUG              CU CU CUACUACUUCUAC   miRNA  3' A  G  A             U 5'
Ortholog Group
Ortholog Groups: OG5_153174	Accession Taxon NP_001031232 Arabidopsis thaliana NP_176656 Arabidopsis thaliana NP_179534 Arabidopsis thaliana NP_187051 ( AT3G04010 ) Arabidopsis thaliana NP_197323 Arabidopsis thaliana NP_001050810 Oryza sativa Japonica Group NP_001051526 Oryza sativa Japonica Group NP_001058984 Oryza sativa Japonica Group 29950.m001151 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32227 0.0 1 486 No hit NA Pfam PF00332 8.6E-71 33 352 IPR000490 Glycoside hydrolase, family 17 SUPERFAMILY SSF51445 5.4E-72 33 352 IPR017853 Glycoside hydrolase, superfamily ProSitePatterns PS00587 NA 267 280 IPR000490 Glycoside hydrolase, family 17 Pfam PF07983 6.4E-16 373 444 IPR012946 X8 SMART SM00768 3.5E-37 373 457 IPR012946 X8
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787