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Locus name | AT1G67360 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Lipid/Carbohydrate metabolism |
Effect for Senescence | unclear |
Gene Description | rubber elongation factor (REF) family protein contains Pfam profile: PF05755 rubber elongation factor protein (REF) |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Sequence | AT1G67360.1 | Genomic | mRNA | CDS | Protein AT1G67360.2 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT1G67360.1 miRNA: ath-miR419 miRNA: ath-miR419 mfe: -24.7 kcal/mol p-value: 0.014915
position: 163 target 5' A G 3' AACA CC UAGCGUUCGUGA UUGU GG GUCGUAAGUAUU miRNA 3' G A A 5'
target: AT1G67360.2 miRNA: ath-miR419 miRNA: ath-miR419 mfe: -24.7 kcal/mol p-value: 0.016495
position: 261 target 5' A G 3' AACA CC UAGCGUUCGUGA UUGU GG GUCGUAAGUAUU miRNA 3' G A A 5'
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Ortholog Group | |
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Ortholog Groups: OG5_189909 | |
Cross Link | |
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Database | Entry ID | E-value | Start | End | InterPro ID | Description | Pfam | PF05755 | 5.1E-81 | 5 | 209 | IPR008802 | Rubber elongation factor |
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Localization 1 | Localization | plasma membrane,endoplasmic reticulum | Evidence | SUBAcon | Pubmed ID | 23180787 |
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Localization 2 | Localization | vacuole,plasma membrane | Evidence | SUBAcon | Pubmed ID | 23180787 |
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