Basic information
Locus name	AT5G11110
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	sucrose-phosphate synthase, putative similar to sucrose-phosphate synthase isoform 1, Citrus unshiu, PIR:S72648
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process biosynthetic process sucrose metabolic process molecular function sucrose-phosphate synthase activity
Pathway	KEGG map00500 (EC 2.4.1.14)
Sequence	AT5G11110.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G11110.1  miRNA: ath-miR395b miRNA: ath-miR395b mfe: -30.0 kcal/mol  p-value: 0.032136  position:  3326  target 5' C                 G  G 3'             AGUCUCCUCAAGC CUU AG              UCAGGGGGGUUUG GAA UC   miRNA  3' C             U   G    5'  target: AT5G11110.1  miRNA: ath-miR395c miRNA: ath-miR395c mfe: -30.0 kcal/mol  p-value: 0.026187  position:  3326  target 5' C                 G  G 3'             AGUCUCCUCAAGC CUU AG              UCAGGGGGGUUUG GAA UC   miRNA  3' C             U   G    5'  target: AT5G11110.1  miRNA: ath-miR395f miRNA: ath-miR395f mfe: -30.0 kcal/mol  p-value: 0.030087  position:  3326  target 5' C                 G  G 3'             AGUCUCCUCAAGC CUU AG              UCAGGGGGGUUUG GAA UC   miRNA  3' C             U   G    5'
Ortholog Group
Ortholog Groups: OG5_135052	Accession Taxon NP_001031609 Arabidopsis thaliana NP_171984 Arabidopsis thaliana NP_192750 Arabidopsis thaliana NP_196672 ( AT5G11110 ) Arabidopsis thaliana NP_197528 Arabidopsis thaliana 105328 Chlamydomonas reinhardtii NP_001046108 Oryza sativa Japonica Group NP_001061495 Oryza sativa Japonica Group NP_001067569 Oryza sativa Japonica Group estExt_Genewise1.C_1310087 Physcomitrella patens subsp. patens estExt_Genewise1.C_660156 Physcomitrella patens subsp. patens 28543.m000384 Ricinus communis 29848.m004599 Ricinus communis 29904.m002903 Ricinus communis 30074.m001336 Ricinus communis XP_002947970 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description TIGRFAM TIGR02468 0.0 1 1040 IPR012819 Sucrose phosphate synthase, plant PANTHER PTHR12526 0.0 35 704 No hit NA Coils Coil NA 93 127 No hit NA SUPERFAMILY SSF53756 9.0E-62 191 667 No hit NA Pfam PF13579 8.4E-8 200 399 No hit NA Pfam PF00534 3.9E-24 473 647 IPR001296 Glycosyl transferase, family 1 SUPERFAMILY SSF56784 8.6E-5 783 983 IPR023214 HAD-like domain Pfam PF05116 7.2E-14 796 986 IPR006380 Sucrose-phosphate synthase
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787