Basic information
Locus name	AT1G79680
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	wall-associated kinase, putative similar to wall-associated kinase 2 GI:4826399 from [Arabidopsis thaliana]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process protein phosphorylation cellular component integral to membrane molecular function ATP binding calcium ion binding polysaccharide binding protein kinase activity protein serine/threonine kinase activity
Sequence	AT1G79680.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G79680.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -22.9 kcal/mol  p-value: 0.091991  position:  334  target 5' A U            U    A 3'             G GGCGGACAAGAG UUGG              C UUGCUUGUUCUU GACU   miRNA  3' A U            U    A 5'  target: AT1G79680.1  miRNA: ath-miR859 miRNA: ath-miR859 mfe: -28.7 kcal/mol  p-value: 0.009881  position:  697  target 5' G   C            C    A 3'             UUG CUUCAUAACAGA GAGG              AAC GAAGUGUUGUCU CUCU   miRNA  3' A   U                   5'
Ortholog Group
Ortholog Groups: OG5_135469	Accession Taxon NP_173062 Arabidopsis thaliana NP_173063 Arabidopsis thaliana NP_173064 Arabidopsis thaliana NP_173066 Arabidopsis thaliana NP_173067 Arabidopsis thaliana NP_173076 Arabidopsis thaliana NP_173233 Arabidopsis thaliana NP_173372 Arabidopsis thaliana NP_177131 Arabidopsis thaliana NP_178085 Arabidopsis thaliana NP_178086 ( AT1G79680 ) Arabidopsis thaliana NP_194839 Arabidopsis thaliana NP_194840 Arabidopsis thaliana NP_849908 Arabidopsis thaliana NP_001054097 Oryza sativa Japonica Group NP_001062164 Oryza sativa Japonica Group NP_001062165 Oryza sativa Japonica Group NP_001063932 Oryza sativa Japonica Group NP_001063933 Oryza sativa Japonica Group NP_001063935 Oryza sativa Japonica Group NP_001068107 Oryza sativa Japonica Group 29908.m006084 Ricinus communis 29908.m006086 Ricinus communis 30174.m008708 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF13947 1.2E-22 25 134 IPR025287 Wall-associated receptor kinase galacturonan-binding domain Pfam PF08488 9.0E-38 188 295 IPR013695 Wall-associated kinase PANTHER PTHR24420 3.1E-237 293 739 No hit NA ProSitePatterns PS01187 NA 323 351 IPR018097 EGF-like calcium-binding, conserved site SUPERFAMILY SSF56112 2.7E-80 415 704 IPR011009 Protein kinase-like domain ProSiteProfiles PS50011 38.4 433 718 IPR000719 Protein kinase, catalytic domain SMART SM00220 1.9E-40 433 711 IPR002290 Serine/threonine- / dual specificity protein kinase, catalytic domain Pfam PF00069 7.0E-51 434 700 IPR000719 Protein kinase, catalytic domain ProSitePatterns PS00108 NA 555 567 IPR008271 Serine/threonine-protein kinase, active site
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787